common-workflow-language/cwljava issues and pull requests

#100 - Bump jackson-databind from 2.13.4.1 to 2.13.4.2

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, java

#99 - Bump jackson-databind from 2.13.4 to 2.13.4.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, java

#98 - Bump snakeyaml-engine from 2.4 to 2.5

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, java

#97 - Bump maven-jar-plugin from 3.2.2 to 3.3.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, java

#96 - Using this SDK to generate CWL Documents

Issue - State: open - Opened by MyleneSimon almost 3 years ago - 5 comments

#95 - Bump jackson-dataformat-yaml from 2.13.3 to 2.13.4

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, java

#94 - Bump jackson-databind from 2.13.3 to 2.13.4

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, java

#93 - explore rendering the markdown in the javadocs

Issue - State: open - Opened by mr-c almost 3 years ago

#92 - Bump snakeyaml-engine from 2.3 to 2.4

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 5 comments
Labels: dependencies, java

#91 - Bump maven-javadoc-plugin from 3.4.0 to 3.4.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies, java

#90 - Bump maven-deploy-plugin from 2.8.2 to 3.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, java

#89 - refresh with latest schema-salad, proposed CWL v1.2.1 changes

Pull Request - State: closed - Opened by mr-c about 3 years ago - 1 comment

#88 - refresh with latest schema-salad, proposed CWL v1.2.1 changes

Pull Request - State: closed - Opened by mr-c about 3 years ago

#87 - Bump jackson-databind from 2.13.2.2 to 2.13.3

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, java

#86 - Bump jackson-dataformat-yaml from 2.13.2 to 2.13.3

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies, java

#85 - add shortname funtion with test

Pull Request - State: closed - Opened by mr-c about 3 years ago

#84 - Bump github/codeql-action from 1 to 2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, github_actions

#83 - Bump maven-javadoc-plugin from 3.3.2 to 3.4.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#82 - refresh codegen to pick up secfiles DSL fix

Pull Request - State: closed - Opened by mr-c over 3 years ago - 1 comment

#81 - secondaryFiles with pattern cannot be parsed when given in workflow inputs

Issue - State: closed - Opened by YuxinShi0423 over 3 years ago - 4 comments

#80 - Bump jacoco-maven-plugin from 0.8.7 to 0.8.8

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#79 - Bump jackson-databind from 2.13.2.1 to 2.13.2.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#78 - [Snyk] Security upgrade com.fasterxml.jackson.core:jackson-databind from 2.13.2 to 2.13.2.1

Pull Request - State: closed - Opened by snyk-bot over 3 years ago

#77 - Bump maven-compiler-plugin from 3.10.0 to 3.10.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#76 - Bump jackson-dataformat-yaml from 2.13.1 to 2.13.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#75 - Bump jackson-databind from 2.13.1 to 2.13.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#74 - Bump actions/checkout from 2 to 3

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, github_actions

#73 - Bump maven-compiler-plugin from 3.9.0 to 3.10.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#72 - Bump maven-javadoc-plugin from 3.3.1 to 3.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 2 comments
Labels: dependencies, java

#71 - Enum symbols are plain strings

Pull Request - State: closed - Opened by mr-c over 3 years ago - 1 comment

#70 - Enum types are not parsed correctly

Issue - State: closed - Opened by jdidion over 3 years ago - 6 comments

#69 - Bump maven-compiler-plugin from 3.8.1 to 3.9.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#68 - Bump maven-jar-plugin from 3.2.1 to 3.2.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#67 - Embedded process ID is ignored

Issue - State: closed - Opened by jdidion over 3 years ago - 2 comments

#66 - Bump maven-jar-plugin from 3.2.0 to 3.2.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#65 - Bump jackson-databind from 2.12.6 to 2.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#64 - Bump jackson-dataformat-yaml from 2.10.4 to 2.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies, java

#63 - [Snyk] Fix for 3 vulnerabilities

Pull Request - State: closed - Opened by snyk-bot over 3 years ago

#62 - scope check: chop off the correct end of the fragment

Pull Request - State: closed - Opened by mr-c over 3 years ago - 1 comment

#61 - WorkflowStepInput source IDs incorrect when parsing workflow packed with cwlpack

Issue - State: closed - Opened by jdidion over 3 years ago - 5 comments

#60 - Bump maven-compiler-plugin from 3.8.0 to 3.8.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies, java

#59 - Bump commons-lang3 from 3.7 to 3.12.0

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies, java

#58 - Bump maven-jar-plugin from 2.4 to 3.2.0

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies, java

#57 - Bump snakeyaml-engine from 2.2.1 to 2.3

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies, java

#56 - Bump maven-surefire-plugin from 2.21.0 to 2.22.2

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies, java

#55 - Bump maven-javadoc-plugin from 3.1.1 to 3.3.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies, java

#54 - Bump junit from 4.13.1 to 4.13.2

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies, java

#53 - Create dependabot.yml

Pull Request - State: closed - Opened by mr-c almost 4 years ago

#52 - Create codeql-analysis.yml

Pull Request - State: closed - Opened by mr-c almost 4 years ago

#51 - Add helper to upgrade documents to CWL v1.2

Issue - State: open - Opened by mr-c almost 4 years ago
Labels: enhancement, help wanted

#50 - Workflow with imported schema is not parsable when packed

Issue - State: closed - Opened by jdidion almost 4 years ago - 1 comment

#49 - add tests for packed versions of the conformance tests

Pull Request - State: closed - Opened by mr-c almost 4 years ago

#48 - improve secondary files & check 'class' fields early

Pull Request - State: closed - Opened by mr-c almost 4 years ago

#47 - add coverage status badge

Pull Request - State: closed - Opened by mr-c almost 4 years ago

#46 - measure test coverage

Pull Request - State: closed - Opened by mr-c almost 4 years ago

#45 - secondaryFiles solo long spec

Pull Request - State: closed - Opened by mr-c almost 4 years ago - 1 comment

#44 - freshen & enable proper baseUris for anonymous items

Pull Request - State: closed - Opened by mr-c almost 4 years ago

#43 - CWL version is not set when parsing a packed workflow

Issue - State: open - Opened by jdidion over 4 years ago - 4 comments

#42 - add explicit copyright and license to each file

Pull Request - State: closed - Opened by mr-c over 4 years ago

#41 - Add Apache 2.0 license

Issue - State: closed - Opened by mr-c over 4 years ago

#40 - NullPointerException

Issue - State: closed - Opened by jdidion over 4 years ago - 1 comment

#39 - Fix workflow parsing

Pull Request - State: closed - Opened by mr-c over 4 years ago - 1 comment

#38 - fix $import & expressions

Pull Request - State: closed - Opened by mr-c over 4 years ago

#37 - Workflows are not parsed correctly

Issue - State: closed - Opened by jdidion over 4 years ago - 1 comment

#36 - No way to access custom metadata

Issue - State: open - Opened by jdidion over 4 years ago - 2 comments

#35 - add more tests

Pull Request - State: closed - Opened by mr-c over 4 years ago

#34 - Include testing with documents from the CWL conformance tests

Pull Request - State: closed - Opened by mr-c over 4 years ago

#33 - add Travis CI testing

Pull Request - State: closed - Opened by mr-c over 4 years ago

#32 - Enable SecondaryDsl parsing & stricter "class" checking

Pull Request - State: closed - Opened by mr-c over 4 years ago

#31 - Fails to parse requirements correctly

Issue - State: closed - Opened by jdidion over 4 years ago - 5 comments

#30 - SchemaDefRequirement not parsed correctly

Issue - State: closed - Opened by jdidion almost 5 years ago - 2 comments

#29 - Fails to parse conformance tests (ValidationException: Failed to match union type)

Issue - State: closed - Opened by jdidion almost 5 years ago - 4 comments

#28 - Incomplete $import support

Issue - State: closed - Opened by jdidion almost 5 years ago - 5 comments

#27 - explore alternative schema with better ease of use for `hints`

Issue - State: closed - Opened by mr-c almost 5 years ago

#26 - Needs tests cases :-)

Issue - State: closed - Opened by mr-c almost 5 years ago - 1 comment

#25 - apply enum fixes from @jmchilton

Pull Request - State: closed - Opened by mr-c almost 5 years ago

#24 - Revert changes that depend on Java 11+

Pull Request - State: closed - Opened by jdidion almost 5 years ago - 1 comment

#23 - Bump junit from 4.12 to 4.13.1

Pull Request - State: closed - Opened by dependabot[bot] almost 5 years ago
Labels: dependencies

#22 - [ImgBot] optimizes images

Pull Request - State: closed - Opened by imgbot[bot] about 7 years ago

#21 - Yaml output of the instantiated CommandLineTool Object

Issue - State: closed - Opened by pgrosu over 7 years ago - 1 comment

#20 - Regarding the question mark notation

Issue - State: closed - Opened by pgrosu almost 9 years ago - 2 comments

#19 - Step 1 (schema_salad -> UML)

Issue - State: closed - Opened by pgrosu about 9 years ago - 5 comments

#18 - Dynamic Graph Workflows Concept

Issue - State: closed - Opened by pgrosu about 9 years ago

#17 - Update SystemCommandExecution.java

Pull Request - State: closed - Opened by fjrmoreews about 9 years ago - 1 comment

#16 - compare raw yaml dumps from Rabix, here, others

Issue - State: closed - Opened by mr-c over 9 years ago - 1 comment

#15 - Document preprocessing and resolution

Issue - State: closed - Opened by pgrosu over 9 years ago

#14 - Official domain name question

Issue - State: closed - Opened by pgrosu over 9 years ago - 2 comments

#13 - CWL tool discovery

Issue - State: closed - Opened by ThilinaManamgoda over 9 years ago - 19 comments

#12 - A small issue about abstract and method definition

Issue - State: closed - Opened by pgrosu over 9 years ago - 4 comments

#11 - Avoid cwltool dependency

Issue - State: closed - Opened by stain over 9 years ago - 4 comments

#10 - accessing metadata

Issue - State: closed - Opened by mr-c over 9 years ago - 7 comments

#9 - mvn javadoc:javadoc fails

Issue - State: closed - Opened by mr-c over 9 years ago - 1 comment

#8 - Feature/refactor alternative

Pull Request - State: closed - Opened by denis-yuen over 9 years ago

#7 - Refactoring avro generated code into submodule.

Pull Request - State: closed - Opened by denis-yuen over 9 years ago

#6 - Selecting an implementation

Issue - State: closed - Opened by kellrott over 9 years ago - 20 comments

#5 - Moving code around into modules

Pull Request - State: closed - Opened by kellrott over 9 years ago - 1 comment

#4 - Refactoring avro generated code into submodule.

Pull Request - State: closed - Opened by kellrott over 9 years ago - 1 comment

#3 - GPL?

Issue - State: closed - Opened by kellrott over 9 years ago - 2 comments

#2 - Feature/contribute experiment

Pull Request - State: closed - Opened by denis-yuen over 9 years ago - 1 comment

#1 - Code generation from avro

Issue - State: closed - Opened by denis-yuen over 9 years ago - 3 comments

GitHub / common-workflow-language/cwljava issues and pull requests