Ecosyste.ms: Issues

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GitHub / common-workflow-language/common-workflow-language issues and pull requests

#961 - Provide a way for control-flow workflow managers to use CWL

Issue - State: open - Opened by kinow 13 days ago
Labels: enhancement, Unimplemented-Idea, proposal

#960 - Clarify saladVersion

Pull Request - State: open - Opened by tom-tan about 1 month ago - 1 comment

#958 - Add support for markdown report

Pull Request - State: closed - Opened by tom-tan 3 months ago

#957 - Use "Galaxy Social" code for our social media posts

Issue - State: open - Opened by mr-c 3 months ago

#956 - +yaml is now valid for IANA media types

Issue - State: open - Opened by mr-c 7 months ago - 2 comments

#954 - Move `label` to `id`

Pull Request - State: closed - Opened by tom-tan over 1 year ago

#953 - Added CWLObjectType named union

Pull Request - State: closed - Opened by GlassOfWhiskey over 1 year ago

#952 - Update citation

Pull Request - State: closed - Opened by mr-c over 1 year ago

#951 - Add CodeQL workflow for GitHub code scanning

Pull Request - State: closed - Opened by lgtm-com[bot] almost 2 years ago

#949 - cwltool --print-deps fails with workflows having namespaced location steps

Issue - State: closed - Opened by jmfernandez almost 2 years ago - 1 comment

#948 - Broken Citation link fix

Pull Request - State: closed - Opened by Smyja almost 2 years ago - 1 comment

#947 - Request for Multiple docker images

Issue - State: open - Opened by sagnikbanerjee15 about 2 years ago - 1 comment

#946 - add CACM paper

Pull Request - State: closed - Opened by mr-c about 2 years ago

#944 - Support local paths for dockerLoad & dockerImport

Issue - State: open - Opened by mr-c over 2 years ago

#943 - Fix tags for workfows

Pull Request - State: closed - Opened by tom-tan over 2 years ago - 1 comment

#942 - Fix `-l` to list tests without `cwl-runner`

Pull Request - State: closed - Opened by tom-tan over 2 years ago

#941 - Fix tags for conformance tests

Pull Request - State: closed - Opened by tom-tan over 2 years ago - 1 comment

#940 - Extract tool and version for cwl provenance

Issue - State: open - Opened by jjkoehorst over 2 years ago

#939 - channels concept

Issue - State: open - Opened by tetron over 2 years ago - 7 comments

#938 - More custom data types

Issue - State: open - Opened by stevekm over 2 years ago - 1 comment

#937 - Fix typos found by codespell

Pull Request - State: open - Opened by DimitriPapadopoulos over 2 years ago

#936 - enums as URIs: enhance documentation, fix behaviour

Issue - State: open - Opened by mr-c over 2 years ago

#935 - Create a "CWL linter" tool

Issue - State: open - Opened by melibleq over 2 years ago - 2 comments

#934 - Fix typo

Pull Request - State: closed - Opened by tom-tan almost 3 years ago - 1 comment

#933 - Allow not only bind-mounts as inputs but also named volume mounts

Issue - State: closed - Opened by jotasi almost 3 years ago - 2 comments

#931 - Gather implementation guidance

Issue - State: open - Opened by mr-c almost 3 years ago

#929 - Clarify $() and ${}

Pull Request - State: closed - Opened by kinow about 3 years ago - 2 comments

#927 - error: error while writing Hello: /var/spool/cwl/Hello.class

Issue - State: closed - Opened by DawnEve about 3 years ago - 16 comments

#926 - delete unneccessary files

Pull Request - State: closed - Opened by mr-c about 3 years ago - 1 comment

#925 - ArraySchema.items typedsl

Pull Request - State: closed - Opened by mr-c about 3 years ago - 1 comment

#924 - adapt test run script to forward exclusion args

Pull Request - State: closed - Opened by rupertnash over 3 years ago

#922 - rename/alias dockerImageId to dockerImageName

Issue - State: open - Opened by qwofford over 3 years ago - 1 comment

#921 - Register CWL as an "identified ICT standard" for EU public procurement

Issue - State: open - Opened by mr-c over 3 years ago - 4 comments

#920 - Reading filenames from another file in the runtime and treating them as files

Issue - State: closed - Opened by mr-eyes over 3 years ago - 2 comments

#919 - 2021 CWL Mini Conference planning

Issue - State: closed - Opened by mr-c over 3 years ago - 13 comments

#918 - Supporting `cwl:hints` in addition to `cwl:requirements` for input objects

Issue - State: open - Opened by tom-tan almost 4 years ago - 9 comments

#916 - Any does not include nulls

Pull Request - State: open - Opened by mr-c almost 4 years ago - 1 comment

#915 - add a cwl-runner error code for validation failure

Issue - State: open - Opened by mr-c almost 4 years ago - 3 comments
Labels: help wanted

#914 - Define the concept of an "opaque string"

Issue - State: open - Opened by mr-c almost 4 years ago - 6 comments

#912 - Develop a CWL Mission Statement

Issue - State: closed - Opened by swzCuroverse almost 4 years ago - 4 comments

#911 - Add ability to manipulate WorkflowOutputParameter with some valueFrom

Issue - State: open - Opened by illusional about 4 years ago - 1 comment
Labels: Unimplemented-Idea

#909 - Why did not find output file with glob pattern when run cwl-runner

Issue - State: closed - Opened by honghh2018 about 4 years ago - 3 comments

#900 - Conformance tests for renaming output files with basename

Issue - State: open - Opened by bogdang989 over 4 years ago - 3 comments
Labels: conformance test

#896 - Definition of `hints` is inconsistent

Issue - State: open - Opened by ghost over 4 years ago - 6 comments
Labels: simplify syntax

#893 - Document that Directory loadListing behavior in v1.1 is not backwards compatible

Issue - State: open - Opened by bogdang989 over 4 years ago - 3 comments
Labels: bug, help wanted

#890 - Clarify records with multiple inputBindings

Issue - State: open - Opened by bogdang989 almost 5 years ago - 2 comments

#886 - Conformance test for optional record input

Issue - State: open - Opened by ghost almost 5 years ago - 6 comments
Labels: conformance test

#883 - Proposal: Fractional CPU

Issue - State: closed - Opened by ghost about 5 years ago - 4 comments
Labels: proposal

#881 - Clarify the description of `basename` modification in the spec

Issue - State: closed - Opened by tom-tan about 5 years ago - 2 comments

#870 - Grouping outputs from multiple steps into folders/subdirectorys

Issue - State: open - Opened by tonyyzy about 5 years ago - 5 comments

#859 - Proposal: extension of CommandLineTool to make inlined scripts easier

Issue - State: open - Opened by ghost over 5 years ago - 4 comments
Labels: proposal, make running scripts easier

#855 - cwltool --pack v1.0/count-lines8-wf.cwl

Issue - State: closed - Opened by wgerlach over 5 years ago - 3 comments

#850 - Proposal: Allow literal content in `Dirent`

Issue - State: open - Opened by ghost over 5 years ago - 21 comments
Labels: proposal, make running scripts easier

#817 - Wildcard/regex input example ?

Issue - State: closed - Opened by nyue over 5 years ago - 1 comment

#813 - Add conformance test for input binding

Pull Request - State: closed - Opened by tom-tan almost 6 years ago - 1 comment

#801 - Conformance tests 121 and 172 require inconsistent behaviors for `glob` field

Issue - State: closed - Opened by tom-tan almost 6 years ago - 1 comment

#799 - Add conformance test for outputSource referencing workflow input

Issue - State: closed - Opened by bogdang989 almost 6 years ago - 5 comments

#795 - need conformance test for workflow output + linkMerge: merge_flattened

Issue - State: open - Opened by mr-c almost 6 years ago - 1 comment

#791 - Proposal: retry_with statement

Issue - State: open - Opened by ghost almost 6 years ago

#789 - Proposal: Switch statement

Issue - State: closed - Opened by ghost almost 6 years ago - 18 comments
Labels: conditionals, proposal

#788 - Explore JS include in InlineJavascriptRequirement:expressionLib

Issue - State: open - Opened by ghost almost 6 years ago - 5 comments

#777 - Add conformance test(s) for staging array of files in a subdir

Issue - State: closed - Opened by bogdang989 about 6 years ago - 3 comments

#775 - Several terms are used for the value of record type: objects, maps, and records

Issue - State: open - Opened by tom-tan about 6 years ago - 7 comments

#764 - input value restrictions / validations

Issue - State: open - Opened by mr-c about 6 years ago - 19 comments
Labels: proposal

#760 - Unclear specification of `run` field in the workflow description

Issue - State: closed - Opened by tom-tan about 6 years ago - 5 comments

#755 - conformance test for input record + JS

Issue - State: closed - Opened by mr-c about 6 years ago - 2 comments

#754 - need conformance test for multiple entries in a WorkflowOutputParameter.outputSource

Issue - State: closed - Opened by mr-c about 6 years ago - 2 comments

#743 - Why conformance test 63 expect empty result ?

Issue - State: closed - Opened by manabuishii about 6 years ago - 2 comments

#740 - About conformance test requires `location: Any` what does it mean ?

Issue - State: closed - Opened by manabuishii about 6 years ago - 1 comment

#727 - Add any_type_files_bound conformance test

Pull Request - State: open - Opened by ThomasHickman about 6 years ago

#725 - Collecting use cases for workflow level conditionals

Issue - State: closed - Opened by mr-c about 6 years ago - 6 comments
Labels: conditionals

#710 - proposal: File metadata handling and propagation

Issue - State: open - Opened by ghost over 6 years ago - 10 comments

#706 - test for parameter references in CommandLineTool.arguments

Pull Request - State: closed - Opened by mr-c over 6 years ago - 1 comment

#703 - New SchemaDefRequirement conformance test candidate

Issue - State: open - Opened by mr-c over 6 years ago - 3 comments

#654 - CWL v1.1 planning

Issue - State: closed - Opened by mr-c over 6 years ago

#643 - Expected behavior of outputBinding on array of file

Issue - State: open - Opened by buchanae over 6 years ago - 1 comment
Labels: needs-response

#641 - CommandInputRecordField needs `default` field

Issue - State: open - Opened by tom-tan over 6 years ago - 2 comments

#629 - About specification when output class is File

Issue - State: closed - Opened by manabuishii over 6 years ago - 3 comments

#587 - GPU support (discussion)

Issue - State: open - Opened by tetron over 6 years ago - 46 comments

#495 - Proposal for loops

Issue - State: open - Opened by tetron about 7 years ago - 20 comments

#494 - Proposal for conditionals

Issue - State: closed - Opened by tetron about 7 years ago - 15 comments
Labels: conditionals

#476 - Expressions in dockerPull DockerRequirement

Issue - State: closed - Opened by bosonogi about 7 years ago - 12 comments
Labels: Unimplemented-Idea

#421 - register CWL descriptions with IANA & add to `file`'s "magic" database

Issue - State: closed - Opened by mr-c over 7 years ago - 12 comments

#411 - Improve explanations about array level and per-item inputBinding

Issue - State: open - Opened by mr-c over 7 years ago - 1 comment
Labels: spec change