Ecosyste.ms: Issues
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GitHub / common-workflow-language/common-workflow-language issues and pull requests
#961 - Provide a way for control-flow workflow managers to use CWL
Issue -
State: open - Opened by kinow 13 days ago
Labels: enhancement, Unimplemented-Idea, proposal
#960 - Clarify saladVersion
Pull Request -
State: open - Opened by tom-tan about 1 month ago
- 1 comment
#959 - specifying all the process outputs in WorkflowStepOutput (`out` field) is annoying
Issue -
State: open - Opened by mr-c 3 months ago
- 1 comment
#958 - Add support for markdown report
Pull Request -
State: closed - Opened by tom-tan 3 months ago
#957 - Use "Galaxy Social" code for our social media posts
Issue -
State: open - Opened by mr-c 3 months ago
#956 - +yaml is now valid for IANA media types
Issue -
State: open - Opened by mr-c 7 months ago
- 2 comments
#955 - [Output Directory] Output the file on a specific directory
Issue -
State: open - Opened by linsherpa over 1 year ago
#954 - Move `label` to `id`
Pull Request -
State: closed - Opened by tom-tan over 1 year ago
#953 - Added CWLObjectType named union
Pull Request -
State: closed - Opened by GlassOfWhiskey over 1 year ago
#952 - Update citation
Pull Request -
State: closed - Opened by mr-c over 1 year ago
#951 - Add CodeQL workflow for GitHub code scanning
Pull Request -
State: closed - Opened by lgtm-com[bot] almost 2 years ago
#950 - schema: explore removing the other values from cwlVersion (except the current version)
Issue -
State: open - Opened by mr-c almost 2 years ago
#949 - cwltool --print-deps fails with workflows having namespaced location steps
Issue -
State: closed - Opened by jmfernandez almost 2 years ago
- 1 comment
#948 - Broken Citation link fix
Pull Request -
State: closed - Opened by Smyja almost 2 years ago
- 1 comment
#947 - Request for Multiple docker images
Issue -
State: open - Opened by sagnikbanerjee15 about 2 years ago
- 1 comment
#946 - add CACM paper
Pull Request -
State: closed - Opened by mr-c about 2 years ago
#945 - conditional step with `pickValue` method in inputs crashes when condition does not apply
Issue -
State: open - Opened by hariszaf about 2 years ago
- 1 comment
#944 - Support local paths for dockerLoad & dockerImport
Issue -
State: open - Opened by mr-c over 2 years ago
#943 - Fix tags for workfows
Pull Request -
State: closed - Opened by tom-tan over 2 years ago
- 1 comment
#942 - Fix `-l` to list tests without `cwl-runner`
Pull Request -
State: closed - Opened by tom-tan over 2 years ago
#941 - Fix tags for conformance tests
Pull Request -
State: closed - Opened by tom-tan over 2 years ago
- 1 comment
#940 - Extract tool and version for cwl provenance
Issue -
State: open - Opened by jjkoehorst over 2 years ago
#939 - channels concept
Issue -
State: open - Opened by tetron over 2 years ago
- 7 comments
#938 - More custom data types
Issue -
State: open - Opened by stevekm over 2 years ago
- 1 comment
#937 - Fix typos found by codespell
Pull Request -
State: open - Opened by DimitriPapadopoulos over 2 years ago
#936 - enums as URIs: enhance documentation, fix behaviour
Issue -
State: open - Opened by mr-c over 2 years ago
#935 - Create a "CWL linter" tool
Issue -
State: open - Opened by melibleq over 2 years ago
- 2 comments
#934 - Fix typo
Pull Request -
State: closed - Opened by tom-tan almost 3 years ago
- 1 comment
#933 - Allow not only bind-mounts as inputs but also named volume mounts
Issue -
State: closed - Opened by jotasi almost 3 years ago
- 2 comments
#932 - Some tools behave differently if stdin is a plain file versus a device
Issue -
State: open - Opened by mr-c almost 3 years ago
#931 - Gather implementation guidance
Issue -
State: open - Opened by mr-c almost 3 years ago
#930 - conformance tests should not depend on the contents of the 'location' field in Files, Directories
Issue -
State: open - Opened by mr-c almost 3 years ago
#929 - Clarify $() and ${}
Pull Request -
State: closed - Opened by kinow about 3 years ago
- 2 comments
#928 - $graph: extend schema to represent that cwlVersion must be present at the root?
Issue -
State: open - Opened by mr-c about 3 years ago
#927 - error: error while writing Hello: /var/spool/cwl/Hello.class
Issue -
State: closed - Opened by DawnEve about 3 years ago
- 16 comments
#926 - delete unneccessary files
Pull Request -
State: closed - Opened by mr-c about 3 years ago
- 1 comment
#925 - ArraySchema.items typedsl
Pull Request -
State: closed - Opened by mr-c about 3 years ago
- 1 comment
#924 - adapt test run script to forward exclusion args
Pull Request -
State: closed - Opened by rupertnash over 3 years ago
#922 - rename/alias dockerImageId to dockerImageName
Issue -
State: open - Opened by qwofford over 3 years ago
- 1 comment
#921 - Register CWL as an "identified ICT standard" for EU public procurement
Issue -
State: open - Opened by mr-c over 3 years ago
- 4 comments
#920 - Reading filenames from another file in the runtime and treating them as files
Issue -
State: closed - Opened by mr-eyes over 3 years ago
- 2 comments
#919 - 2021 CWL Mini Conference planning
Issue -
State: closed - Opened by mr-c over 3 years ago
- 13 comments
#918 - Supporting `cwl:hints` in addition to `cwl:requirements` for input objects
Issue -
State: open - Opened by tom-tan almost 4 years ago
- 9 comments
#916 - Any does not include nulls
Pull Request -
State: open - Opened by mr-c almost 4 years ago
- 1 comment
#915 - add a cwl-runner error code for validation failure
Issue -
State: open - Opened by mr-c almost 4 years ago
- 3 comments
Labels: help wanted
#914 - Define the concept of an "opaque string"
Issue -
State: open - Opened by mr-c almost 4 years ago
- 6 comments
#912 - Develop a CWL Mission Statement
Issue -
State: closed - Opened by swzCuroverse almost 4 years ago
- 4 comments
#911 - Add ability to manipulate WorkflowOutputParameter with some valueFrom
Issue -
State: open - Opened by illusional about 4 years ago
- 1 comment
Labels: Unimplemented-Idea
#909 - Why did not find output file with glob pattern when run cwl-runner
Issue -
State: closed - Opened by honghh2018 about 4 years ago
- 3 comments
#907 - How to specify lower and upper bound for type `array` in WorkflowInputParameter
Issue -
State: open - Opened by emmanuelmathot over 4 years ago
- 1 comment
#900 - Conformance tests for renaming output files with basename
Issue -
State: open - Opened by bogdang989 over 4 years ago
- 3 comments
Labels: conformance test
#896 - Definition of `hints` is inconsistent
Issue -
State: open - Opened by ghost over 4 years ago
- 6 comments
Labels: simplify syntax
#893 - Document that Directory loadListing behavior in v1.1 is not backwards compatible
Issue -
State: open - Opened by bogdang989 over 4 years ago
- 3 comments
Labels: bug, help wanted
#890 - Clarify records with multiple inputBindings
Issue -
State: open - Opened by bogdang989 almost 5 years ago
- 2 comments
#886 - Conformance test for optional record input
Issue -
State: open - Opened by ghost almost 5 years ago
- 6 comments
Labels: conformance test
#883 - Proposal: Fractional CPU
Issue -
State: closed - Opened by ghost about 5 years ago
- 4 comments
Labels: proposal
#881 - Clarify the description of `basename` modification in the spec
Issue -
State: closed - Opened by tom-tan about 5 years ago
- 2 comments
#870 - Grouping outputs from multiple steps into folders/subdirectorys
Issue -
State: open - Opened by tonyyzy about 5 years ago
- 5 comments
#865 - deprecate and then remove CWL Expressions in Process.{inputs,outputs}.{format,secondaryFiles}
Issue -
State: open - Opened by mr-c about 5 years ago
- 4 comments
#859 - Proposal: extension of CommandLineTool to make inlined scripts easier
Issue -
State: open - Opened by ghost over 5 years ago
- 4 comments
Labels: proposal, make running scripts easier
#855 - cwltool --pack v1.0/count-lines8-wf.cwl
Issue -
State: closed - Opened by wgerlach over 5 years ago
- 3 comments
#850 - Proposal: Allow literal content in `Dirent`
Issue -
State: open - Opened by ghost over 5 years ago
- 21 comments
Labels: proposal, make running scripts easier
#817 - Wildcard/regex input example ?
Issue -
State: closed - Opened by nyue over 5 years ago
- 1 comment
#813 - Add conformance test for input binding
Pull Request -
State: closed - Opened by tom-tan almost 6 years ago
- 1 comment
#801 - Conformance tests 121 and 172 require inconsistent behaviors for `glob` field
Issue -
State: closed - Opened by tom-tan almost 6 years ago
- 1 comment
#799 - Add conformance test for outputSource referencing workflow input
Issue -
State: closed - Opened by bogdang989 almost 6 years ago
- 5 comments
#795 - need conformance test for workflow output + linkMerge: merge_flattened
Issue -
State: open - Opened by mr-c almost 6 years ago
- 1 comment
#791 - Proposal: retry_with statement
Issue -
State: open - Opened by ghost almost 6 years ago
#789 - Proposal: Switch statement
Issue -
State: closed - Opened by ghost almost 6 years ago
- 18 comments
Labels: conditionals, proposal
#788 - Explore JS include in InlineJavascriptRequirement:expressionLib
Issue -
State: open - Opened by ghost almost 6 years ago
- 5 comments
#783 - There are no specific conformance tests about the behavior for nested inputBinding
Issue -
State: open - Opened by tom-tan almost 6 years ago
- 2 comments
#777 - Add conformance test(s) for staging array of files in a subdir
Issue -
State: closed - Opened by bogdang989 about 6 years ago
- 3 comments
#775 - Several terms are used for the value of record type: objects, maps, and records
Issue -
State: open - Opened by tom-tan about 6 years ago
- 7 comments
#764 - input value restrictions / validations
Issue -
State: open - Opened by mr-c about 6 years ago
- 19 comments
Labels: proposal
#763 - v1.1: affirm that WorkflowOutputParameter.outputSource can reference workflow level inputs
Issue -
State: closed - Opened by mr-c about 6 years ago
#761 - Conflict between the conformance test 61 and the spec for parameter references (3.4)
Issue -
State: closed - Opened by tom-tan about 6 years ago
- 7 comments
#760 - Unclear specification of `run` field in the workflow description
Issue -
State: closed - Opened by tom-tan about 6 years ago
- 5 comments
#755 - conformance test for input record + JS
Issue -
State: closed - Opened by mr-c about 6 years ago
- 2 comments
#754 - need conformance test for multiple entries in a WorkflowOutputParameter.outputSource
Issue -
State: closed - Opened by mr-c about 6 years ago
- 2 comments
#749 - Suggested conformance test to be added, testing InitialWorkDirRequirement with directories as output
Issue -
State: open - Opened by whlavina about 6 years ago
- 4 comments
#743 - Why conformance test 63 expect empty result ?
Issue -
State: closed - Opened by manabuishii about 6 years ago
- 2 comments
#740 - About conformance test requires `location: Any` what does it mean ?
Issue -
State: closed - Opened by manabuishii about 6 years ago
- 1 comment
#727 - Add any_type_files_bound conformance test
Pull Request -
State: open - Opened by ThomasHickman about 6 years ago
#725 - Collecting use cases for workflow level conditionals
Issue -
State: closed - Opened by mr-c about 6 years ago
- 6 comments
Labels: conditionals
#710 - proposal: File metadata handling and propagation
Issue -
State: open - Opened by ghost over 6 years ago
- 10 comments
#706 - test for parameter references in CommandLineTool.arguments
Pull Request -
State: closed - Opened by mr-c over 6 years ago
- 1 comment
#703 - New SchemaDefRequirement conformance test candidate
Issue -
State: open - Opened by mr-c over 6 years ago
- 3 comments
#654 - CWL v1.1 planning
Issue -
State: closed - Opened by mr-c over 6 years ago
#643 - Expected behavior of outputBinding on array of file
Issue -
State: open - Opened by buchanae over 6 years ago
- 1 comment
Labels: needs-response
#641 - CommandInputRecordField needs `default` field
Issue -
State: open - Opened by tom-tan over 6 years ago
- 2 comments
#637 - conformance test needed: MultipleInputFeatureRequirement on workflow outputs
Issue -
State: open - Opened by mr-c over 6 years ago
#629 - About specification when output class is File
Issue -
State: closed - Opened by manabuishii over 6 years ago
- 3 comments
#587 - GPU support (discussion)
Issue -
State: open - Opened by tetron over 6 years ago
- 46 comments
#564 - Workflows with inlined definitions of tools or workflows can not be validated by `schema-salad-tool`
Issue -
State: closed - Opened by tom-tan almost 7 years ago
- 6 comments
#525 - be explicit about how to format an input object file via the optional cwl-runner CLI
Issue -
State: closed - Opened by tom-tan about 7 years ago
- 8 comments
#495 - Proposal for loops
Issue -
State: open - Opened by tetron about 7 years ago
- 20 comments
#494 - Proposal for conditionals
Issue -
State: closed - Opened by tetron about 7 years ago
- 15 comments
Labels: conditionals
#476 - Expressions in dockerPull DockerRequirement
Issue -
State: closed - Opened by bosonogi about 7 years ago
- 12 comments
Labels: Unimplemented-Idea
#421 - register CWL descriptions with IANA & add to `file`'s "magic" database
Issue -
State: closed - Opened by mr-c over 7 years ago
- 12 comments
#411 - Improve explanations about array level and per-item inputBinding
Issue -
State: open - Opened by mr-c over 7 years ago
- 1 comment
Labels: spec change