Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / codait/deep-histopath issues and pull requests

#46 - pretrained model weights

Issue - State: open - Opened by luciantunez over 3 years ago

#45 - Could not find the training data sets?

Issue - State: open - Opened by jithumurugan over 3 years ago - 2 comments

#44 - how to tile using level=1 or level=2

Issue - State: open - Opened by cl2227619761 almost 4 years ago

#43 - V2 for Mitosis Detection

Pull Request - State: closed - Opened by feihugis almost 6 years ago

#42 - Save tiled images to disk

Issue - State: closed - Opened by luistelmocosta about 6 years ago - 7 comments

#41 - could you have a version without spark?

Issue - State: closed - Opened by wenhuihuang1979 about 6 years ago - 1 comment

#40 - Unable to import from from tensorflow.python.keras.engine

Issue - State: closed - Opened by bdwyer2 over 6 years ago - 1 comment

#39 - WSI Preprocessing in Python code and docs

Pull Request - State: closed - Opened by deroneriksson over 6 years ago - 2 comments

#38 - Makes the training script compatible with python 3.5

Pull Request - State: closed - Opened by nakul02 almost 7 years ago - 1 comment

#36 - could you send me a copy of grund_truth.csv?

Issue - State: closed - Opened by bugparty almost 7 years ago - 2 comments

#35 - Update prediction notebook

Pull Request - State: closed - Opened by feihugis about 7 years ago

#34 - Predict mitosis proliferation score

Pull Request - State: closed - Opened by feihugis about 7 years ago

#32 - Add mitosis oversampling via class-aware sampling during training

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 1 comment

#31 - Move the clustering functions to detection module and add arr_2_csv and csv_2_arr functions

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#30 - Implement probability map smoothing via convolutions

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 4 comments

#29 - Fix the errors when getting file ids

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#28 - Add the probability threshold into the clustering function

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#27 - Export the FP, TP, FN prediction results into a single or separated files

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#26 - Add an optional false-positive coordinates path to the preprocessing

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 1 comment

#25 - Add an initial model weights option to the training script.

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 1 comment

#24 - Enable the size of mark to represent the prediction probability

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#23 - Add probability thresholds to the prediction evaluation functions

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 2 comments

#22 - Minor revisions for inference

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#21 - Fix marginalization during prediction

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 2 comments

#21 - Fix marginalization during prediction

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 2 comments

#20 - Fix the issues in computing F1 score in the evaluation script

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#19 - Add noise marginalization to the prediction code

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 2 comments

#18 - Improve the efficiency of memory usages

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#17 - Add dbscan cluster functions

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#16 - F1 score for the over all predictions

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#15 - Solve the difference between the prediction and train/eval code paths

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#14 - Add the test for the image quality comparison

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#12 - Improve model robustness via improved image quality

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago

#11 - Fix the padding issues for the small tiles on the edge

Pull Request - State: closed - Opened by feihugis about 7 years ago - 1 comment

#10 - Adding a new hyperparameter tuning script

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 2 comments

#9 - Fix normalization function NumPy datatype issue

Pull Request - State: closed - Opened by dusenberrymw about 7 years ago - 1 comment

#8 - Updates: Prediction threshold logic, random seeds, API location update

Pull Request - State: closed - Opened by dusenberrymw over 7 years ago - 1 comment

#7 - Evaluate the detected mitosis location

Pull Request - State: closed - Opened by feihugis over 7 years ago - 1 comment

#6 - Adding a new evaluation script

Pull Request - State: closed - Opened by dusenberrymw over 7 years ago - 2 comments

#4 - Add more capabilities to the prediction part

Pull Request - State: closed - Opened by feihugis over 7 years ago - 2 comments

#3 - feed_dict={K.learning_phase(): 1} while executing train_mitoses.py

Issue - State: closed - Opened by sukruburakcetin over 7 years ago - 11 comments

#2 - Predict Mitosis using PySpark, Keras, and GPU

Pull Request - State: closed - Opened by feihugis over 7 years ago - 1 comment

#1 - Save sample RDD with or without labels to JPEGs

Pull Request - State: closed - Opened by feihugis over 7 years ago - 1 comment