cnr-ibba/SMARTER-database issues and pull requests

#114 - :zap: enhance genotype conversion

Issue - State: open - Opened by bunop about 1 year ago
Labels: performance

#113 - :sparkles: add Croatian sheep data

Issue - State: open - Opened by bunop about 1 year ago
Labels: enhancement

#112 - :bug: check country for french dataset with GPS coordinates

Issue - State: open - Opened by bunop about 1 year ago
Labels: bug

#111 - :sparkles: convert genotypes from top to forward

Issue - State: open - Opened by bunop about 1 year ago
Labels: enhancement

#110 - ⬆️ Bump jupyter-server from 2.7.3 to 2.11.2

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies

#109 - ⬆️ Bump urllib3 from 1.26.5 to 1.26.18

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#108 - ⬆️ Bump pillow from 9.3.0 to 10.0.1

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#107 - ⬆️ Bump urllib3 from 1.26.5 to 1.26.17

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#106 - :sparkles: add multiple phenotypes to samples

Pull Request - State: closed - Opened by bunop over 1 year ago - 1 comment
Labels: enhancement

#105 - :bookmark: release 0.4.9

Pull Request - State: closed - Opened by bunop over 1 year ago - 1 comment
Labels: enhancement, dependencies

#104 - :arrow_up: upgrade dependencies

Pull Request - State: closed - Opened by bunop over 1 year ago - 1 comment
Labels: dependencies

#103 - :sparkles: add multiple phenotypes to samples

Issue - State: closed - Opened by bunop over 1 year ago
Labels: enhancement

#102 - ⬆️ Bump jupyter-server from 1.17.0 to 2.7.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#101 - ⬆️ Bump tornado from 6.3.2 to 6.3.3

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 3 comments
Labels: dependencies

#100 - ⬆️ Bump certifi from 2022.12.7 to 2023.7.22

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 3 comments
Labels: dependencies

#99 - ⬆️ Bump pygments from 2.8.0 to 2.15.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 3 comments
Labels: dependencies

#98 - :arrow_up: update dependencies

Pull Request - State: closed - Opened by bunop over 1 year ago - 1 comment
Labels: dependencies

#97 - ⬆️ Bump requests from 2.25.1 to 2.31.0

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#96 - ⬆️ Bump tornado from 6.1 to 6.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 2 comments
Labels: dependencies

#95 - :sparkles: generate final genotype files for OAR4 and CHI1 assemblies

Pull Request - State: closed - Opened by bunop over 1 year ago - 1 comment
Labels: enhancement

#94 - :sparkles: import data from dbSNP

Pull Request - State: closed - Opened by bunop over 1 year ago - 1 comment
Labels: enhancement

#93 - :card_file_box: track breeds and countries in countries and breeds collection respectively

Issue - State: open - Opened by bunop over 1 year ago
Labels: enhancement

#92 - :sparkles: Import coordinates from Sheep and Goat projects

Pull Request - State: closed - Opened by bunop almost 2 years ago - 2 comments
Labels: enhancement

#91 - :sparkles: track `ALT` and `REF` alleles in locations

Issue - State: open - Opened by bunop almost 2 years ago
Labels: enhancement

#90 - :bookmark: release v0.4.8

Pull Request - State: closed - Opened by bunop almost 2 years ago - 1 comment
Labels: enhancement

#89 - :sparkles: add new background datasets for goat

Pull Request - State: closed - Opened by bunop almost 2 years ago - 1 comment
Labels: enhancement

#88 - :recycle: revise A/B illumina tracking

Pull Request - State: closed - Opened by bunop almost 2 years ago - 1 comment
Labels: enhancement

#87 - :sparkles: generate final genotype files for OAR4 and CHI1 assemblies

Issue - State: closed - Opened by bunop almost 2 years ago
Labels: enhancement

#86 - :sparkles: add WGS background data for Goat

Issue - State: open - Opened by bunop almost 2 years ago - 1 comment
Labels: enhancement

#85 - :sparkles: add new background datasets for goat

Issue - State: closed - Opened by bunop almost 2 years ago
Labels: enhancement

#84 - :sparkles: check that illumina A/B alleles are tracked properly

Issue - State: closed - Opened by bunop almost 2 years ago
Labels: enhancement

#83 - ⬆️ Bump ipython from 7.31.1 to 8.10.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 2 comments
Labels: dependencies

#82 - :sparkles: integrate background data with published datasets

Pull Request - State: closed - Opened by bunop about 2 years ago - 1 comment
Labels: enhancement

#81 - :sparkles: integrate background data with published datasets

Issue - State: closed - Opened by bunop about 2 years ago
Labels: enhancement

#80 - ⬆️ Bump certifi from 2020.12.5 to 2022.12.7

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 2 comments
Labels: dependencies

#79 - :sparkles: add SNPconvert.py to main src/data scripts

Pull Request - State: closed - Opened by bunop about 2 years ago - 1 comment
Labels: enhancement

#78 - :sparkles: add SNPconvert.py to main src/data scripts

Issue - State: closed - Opened by bunop about 2 years ago
Labels: enhancement

#77 - :bookmark: release v0.4.7

Pull Request - State: closed - Opened by bunop about 2 years ago - 1 comment
Labels: enhancement

#76 - :sparkles: import latest Uruguayan data

Pull Request - State: closed - Opened by bunop about 2 years ago - 1 comment
Labels: enhancement

#75 - :sparkles: import latest Uruguayan data

Issue - State: closed - Opened by bunop about 2 years ago
Labels: enhancement

#74 - ⬆️ Bump pillow from 9.0.1 to 9.3.0

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 2 comments
Labels: dependencies

#73 - :boom: should smarter_id change its format?

Issue - State: open - Opened by bunop over 2 years ago
Labels: bug, question

#72 - :memo: update documentation

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: documentation

#71 - ⬆️ Bump jupyter-server from 1.15.4 to 1.17.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#70 - :sparkles: add hapmap sheep data v2

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: enhancement

#69 - :sparkles: import data from isheep database

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: enhancement

#68 - :bookmark: release v0.4.6

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: enhancement

#67 - :sparkles: import latest Uruguayan data

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: enhancement

#66 - :wrench: configure database connection

Issue - State: closed - Opened by bunop over 2 years ago
Labels: enhancement

#65 - :sparkles: import latest Uruguayan data

Issue - State: closed - Opened by bunop over 2 years ago
Labels: enhancement

#64 - ⬆️ Bump nbconvert from 6.0.7 to 6.5.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#63 - ⬆️ Bump nbconvert from 6.0.7 to 6.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#63 - ⬆️ Bump nbconvert from 6.0.7 to 6.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#63 - ⬆️ Bump nbconvert from 6.0.7 to 6.3.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#62 - ⬆️ Bump mistune from 0.8.4 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#61 - ⬆️ Bump lxml from 4.6.5 to 4.9.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#60 - ⬆️ Bump numpy from 1.21.0 to 1.22.0

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#59 - ⬆️ Bump notebook from 6.4.10 to 6.4.12

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#58 - :sparkles: import data from Spain datasets

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: enhancement

#58 - :sparkles: import data from Spain datasets

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: enhancement

#58 - :sparkles: import data from Spain datasets

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: enhancement

#57 - :sparkles: check variants data before update

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: bug, enhancement

#57 - :sparkles: check variants data before update

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: bug, enhancement

#57 - :sparkles: check variants data before update

Pull Request - State: closed - Opened by bunop over 2 years ago - 1 comment
Labels: bug, enhancement

#56 - :card_file_box: check variants data before update

Issue - State: closed - Opened by bunop over 2 years ago
Labels: bug, enhancement

#56 - :card_file_box: check variants data before update

Issue - State: closed - Opened by bunop over 2 years ago
Labels: bug, enhancement

#56 - :card_file_box: check variants data before update

Issue - State: closed - Opened by bunop over 2 years ago
Labels: bug, enhancement

#55 - :bookmark: release v0.4.5

Pull Request - State: closed - Opened by bunop almost 3 years ago - 1 comment
Labels: bug, enhancement, dependencies

#55 - :bookmark: release v0.4.5

Pull Request - State: closed - Opened by bunop almost 3 years ago - 1 comment
Labels: bug, enhancement, dependencies

#55 - :bookmark: release v0.4.5

Pull Request - State: closed - Opened by bunop almost 3 years ago - 1 comment
Labels: bug, enhancement, dependencies

#54 - :sparkles: import data from Hungary

Pull Request - State: closed - Opened by bunop almost 3 years ago - 1 comment
Labels: enhancement

#54 - :sparkles: import data from Hungary

Pull Request - State: closed - Opened by bunop almost 3 years ago - 1 comment
Labels: enhancement

#54 - :sparkles: import data from Hungary

Pull Request - State: closed - Opened by bunop almost 3 years ago - 1 comment
Labels: enhancement

#53 - :sparkles: import data from Hungary

Issue - State: closed - Opened by bunop almost 3 years ago
Labels: enhancement

#53 - :sparkles: import data from Hungary

Issue - State: closed - Opened by bunop almost 3 years ago
Labels: enhancement

#53 - :sparkles: import data from Hungary

Issue - State: closed - Opened by bunop almost 3 years ago
Labels: enhancement

#52 - :sparkles: import data from Spain datasets

Issue - State: closed - Opened by bunop almost 3 years ago
Labels: enhancement, question

#52 - :sparkles: import data from Spain datasets

Issue - State: closed - Opened by bunop almost 3 years ago
Labels: enhancement, question

#52 - :sparkles: import data from Spain datasets

Issue - State: closed - Opened by bunop almost 3 years ago
Labels: enhancement, question

#51 - ⬆️ Bump notebook from 6.4.1 to 6.4.10

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#51 - ⬆️ Bump notebook from 6.4.1 to 6.4.10

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#51 - ⬆️ Bump notebook from 6.4.1 to 6.4.10

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#50 - ⬆️ Bump jupyter-server from 1.10.2 to 1.15.4

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#50 - ⬆️ Bump jupyter-server from 1.10.2 to 1.15.4

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#50 - ⬆️ Bump jupyter-server from 1.10.2 to 1.15.4

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#49 - ⬆️ Bump pillow from 9.0.0 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#49 - ⬆️ Bump pillow from 9.0.0 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#49 - ⬆️ Bump pillow from 9.0.0 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#48 - ⬆️ Bump numpy from 1.20.1 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#48 - ⬆️ Bump numpy from 1.20.1 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#48 - ⬆️ Bump numpy from 1.20.1 to 1.21.0

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 2 comments
Labels: dependencies

#47 - :sparkles: import data from isheep database

Issue - State: closed - Opened by bunop almost 3 years ago
Labels: enhancement

#47 - :sparkles: import data from isheep database

Issue - State: closed - Opened by bunop almost 3 years ago
Labels: enhancement

#47 - :sparkles: import data from isheep database

Issue - State: closed - Opened by bunop almost 3 years ago
Labels: enhancement

#46 - ⬆️ Bump ipython from 7.20.0 to 7.31.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#46 - ⬆️ Bump ipython from 7.20.0 to 7.31.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#46 - ⬆️ Bump ipython from 7.20.0 to 7.31.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#45 - ⬆️ Bump pillow from 8.3.2 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#45 - ⬆️ Bump pillow from 8.3.2 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

#45 - ⬆️ Bump pillow from 8.3.2 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 2 comments
Labels: dependencies

GitHub / cnr-ibba/SMARTER-database issues and pull requests