Ecosyste.ms: Issues

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GitHub / clintval/snakescale issues and pull requests

#31 - Adding in many staging wrappers

Pull Request - State: open - Opened by clintval about 6 years ago

#30 - Recommend only using a Conda installation

Pull Request - State: closed - Opened by clintval about 6 years ago

#29 - Improved static/dynamic analysis configs

Pull Request - State: closed - Opened by clintval about 6 years ago

#28 - Warning about double `/` in wrapper path

Issue - State: closed - Opened by clintval about 6 years ago - 1 comment

#27 - --printshellcmds does not work for wrappers

Issue - State: open - Opened by clintval about 6 years ago - 1 comment

#26 - Specify units in JVM resources for size

Issue - State: open - Opened by clintval about 6 years ago

#25 - TravisCI is failling

Issue - State: closed - Opened by clintval about 6 years ago - 1 comment

#24 - Automatically bump version, compile for PyPi and Anaconda

Issue - State: open - Opened by clintval about 6 years ago

#23 - Automatically build documentation for each wrapper

Issue - State: open - Opened by clintval about 6 years ago

#22 - Each wrapper needs a conda compatible installation

Issue - State: closed - Opened by clintval about 6 years ago - 1 comment

#21 - Remove old wrappers

Pull Request - State: closed - Opened by clintval about 6 years ago

#20 - Version bump to v0.7.0

Pull Request - State: closed - Opened by clintval about 6 years ago

#19 - Make Snakemake an optional install at the package level

Pull Request - State: closed - Opened by clintval about 6 years ago

#18 - Fix package data install, and test discovery in package name

Pull Request - State: closed - Opened by clintval about 6 years ago

#17 - Improvements to the Conda package

Pull Request - State: closed - Opened by clintval about 6 years ago

#16 - Name reservation on PyPi, GitHub, and ReadTheDocs

Pull Request - State: closed - Opened by clintval about 6 years ago

#15 - WIP: Scalpel wrapper

Pull Request - State: closed - Opened by clintval over 6 years ago

#14 - Use better Path idiom

Issue - State: closed - Opened by clintval over 6 years ago

#13 - WIP: Library as a working module

Pull Request - State: closed - Opened by clintval over 6 years ago - 1 comment

#12 - Add README, dwgsim, move all tools to subdir

Pull Request - State: closed - Opened by clintval almost 7 years ago

#11 - Prefix/suffix of outputs now defined in params, sftp settings ignored

Pull Request - State: closed - Opened by clintval about 7 years ago

#10 - Added wrapper for picard FilterSamReads

Pull Request - State: closed - Opened by clintval about 7 years ago

#9 - Added draft tools for Kraken classify and report

Pull Request - State: closed - Opened by clintval about 7 years ago

#8 - Reverse a boolean for gVCF

Pull Request - State: closed - Opened by clintval about 7 years ago

#7 - Resources to fgbio clipBam

Pull Request - State: closed - Opened by clintval about 7 years ago

#6 - Fixed a small typo

Pull Request - State: closed - Opened by clintval about 7 years ago

#5 - Added key cleaning for fgbio

Pull Request - State: closed - Opened by clintval about 7 years ago

#4 - Python -> tool param agnostic wrappers for all tools

Pull Request - State: closed - Opened by clintval about 7 years ago

#3 - Added picard MergeSameFiles and bwa mem paired end align

Pull Request - State: closed - Opened by clintval about 7 years ago

#2 - Updated all Picard wrappers, and added a few more

Pull Request - State: closed - Opened by clintval about 7 years ago

#1 - Picard run directory QC and VarDictJava

Pull Request - State: closed - Opened by clintval about 7 years ago