Ecosyste.ms: Issues

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GitHub / clintval/nucleic issues and pull requests

#38 - Bump black from 18.6b2 to 24.3.0

Pull Request - State: open - Opened by dependabot[bot] 8 months ago
Labels: dependencies

#37 - Library may not be installable anymore

Issue - State: open - Opened by clintval over 2 years ago

#36 - Additional IO and plotting functions

Pull Request - State: open - Opened by clintval almost 6 years ago - 1 comment

#34 - Deprecated 0.6 functions and added hierarchy cluster

Pull Request - State: closed - Opened by clintval almost 6 years ago - 1 comment

#33 - Make plots more customizable.

Issue - State: closed - Opened by scottrk2 almost 6 years ago - 2 comments

#32 - Disable pointer coordinates and data export for the lower set of axes

Issue - State: closed - Opened by clintval about 6 years ago
Labels: enhancement

#30 - Find less magic looking numbers for cartesian grids

Issue - State: open - Opened by clintval about 6 years ago

#29 - Fix classname of `GridSpec`

Issue - State: closed - Opened by clintval about 6 years ago

#28 - Move from matplotlib to toyplot for SVG figures

Pull Request - State: closed - Opened by clintval about 6 years ago - 1 comment

#27 - Better API docs

Pull Request - State: closed - Opened by clintval about 6 years ago

#26 - Limit scikit-bio to less than 0.5.0 for readthedocs env.

Pull Request - State: closed - Opened by clintval about 6 years ago

#25 - Generalize the Variant class, include deprecation warnings

Pull Request - State: closed - Opened by clintval about 6 years ago - 1 comment

#24 - Move to skbio.DNA as base-type

Pull Request - State: closed - Opened by clintval about 6 years ago - 1 comment

#23 - Fix labels for colorbar in plot_spectrum()

Pull Request - State: closed - Opened by clintval about 6 years ago

#22 - v0.5.0

Pull Request - State: closed - Opened by clintval about 6 years ago

#21 - Project name change

Pull Request - State: closed - Opened by clintval about 6 years ago

#20 - skbio not listed as dependency

Issue - State: closed - Opened by gpratt about 6 years ago - 1 comment

#19 - Offline test support for doctests

Issue - State: open - Opened by clintval about 6 years ago

#18 - Rebrand of project, test infrastructure, documentation

Pull Request - State: closed - Opened by clintval about 6 years ago

#17 - Completely new API and TiTv figure

Pull Request - State: closed - Opened by clintval over 6 years ago

#16 - Option to report ref pyrimidine and purine triplets simultaneously

Issue - State: open - Opened by scottrk2 over 6 years ago - 4 comments
Labels: feature request

#15 - Clear exception needed when adding purine Snv to pyrimidine Spectrum and vice-versa

Issue - State: closed - Opened by clintval over 6 years ago
Labels: enhancement, good first issue

#14 - Added method `set_context_from_fasta_locus` and more tests

Pull Request - State: closed - Opened by clintval over 6 years ago - 1 comment

#13 - pip install fails

Issue - State: closed - Opened by scottrk2 over 6 years ago - 3 comments

#12 - Allow setup.py build and install

Pull Request - State: closed - Opened by clintval over 6 years ago

#11 - setup.py fails

Issue - State: closed - Opened by scottrk2 over 6 years ago - 2 comments
Labels: bug

#10 - More unit tests on spectrum

Pull Request - State: closed - Opened by clintval over 6 years ago - 1 comment

#9 - Reduce whitespace in figure padding with `tight_layout`

Issue - State: closed - Opened by clintval almost 7 years ago - 1 comment
Labels: enhancement

#8 - Added testing framework including CI and coverage

Pull Request - State: closed - Opened by clintval almost 7 years ago

#7 - Trinucleotide context heatmaps for multiple sample comparisons

Issue - State: open - Opened by clintval almost 7 years ago - 1 comment
Labels: feature request

#6 - Local copy of published Spectrum data?

Issue - State: closed - Opened by clintval almost 7 years ago - 1 comment
Labels: feature request

#5 - Substitution type labels and colored patches need better alignment

Issue - State: closed - Opened by clintval almost 7 years ago - 1 comment
Labels: enhancement

#4 - Raise custom ValueError for a blank Spectrum when `.density` is called

Issue - State: closed - Opened by clintval almost 7 years ago - 1 comment

#3 - Interface to current online COSMIC signatures

Pull Request - State: closed - Opened by clintval almost 7 years ago

#2 - PyPi install location

Pull Request - State: closed - Opened by clintval almost 7 years ago

#1 - First draft

Pull Request - State: closed - Opened by clintval almost 7 years ago