Ecosyste.ms: Issues

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GitHub / clinical-genomics/schug issues and pull requests

#32 - Patch 1.0.1

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#32 - Patch 1.0.1

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#31 - Use memory DB as default DB

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 4 comments

#31 - Use memory DB as default DB

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 4 comments

#30 - Schug service doesn't start because of missing database file

Issue - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments
Labels: Bug

#30 - Schug service doesn't start because of missing database file

Issue - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments
Labels: Bug

#29 - Release v.1

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 5 comments

#29 - Release v.1

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 5 comments

#28 - Fix a test that was going to fail

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#28 - Fix a test that was going to fail

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#27 - Basic Docker and commands howto

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#27 - Basic Docker and commands howto

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#26 - PyPI publish GitHub action

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#26 - PyPI publish GitHub action

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#25 - Fix Docker Hub prod push GitHub action

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#25 - Fix Docker Hub prod push GitHub action

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#24 - Push to Docker Hub stage and prod actions

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#23 - Add GitHub actions to publish to PyPi and Docker Hub

Issue - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment
Labels: Enhancement

#22 - Handle the Ensembl biomart queries using an external library

Issue - State: open - Opened by northwestwitch almost 2 years ago
Labels: Enhancement

#21 - Fixed missing header in files downloaded from Ensembl - and deprecated pkg_resources

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#20 - Deprecation warning: pkg_resources is deprecated as an API

Issue - State: closed - Opened by northwestwitch almost 2 years ago

#20 - Deprecation warning: pkg_resources is deprecated as an API

Issue - State: closed - Opened by northwestwitch almost 2 years ago

#19 - Files downloaded from Ensembl don't have a header

Issue - State: closed - Opened by northwestwitch almost 2 years ago

#19 - Files downloaded from Ensembl don't have a header

Issue - State: closed - Opened by northwestwitch almost 2 years ago

#18 - Add short howto describing how to launch the app with Docker

Issue - State: closed - Opened by northwestwitch almost 2 years ago
Labels: Documentation

#18 - Add short howto describing how to launch the app with Docker

Issue - State: closed - Opened by northwestwitch almost 2 years ago
Labels: Documentation

#17 - Dockerfile and docker-compose launcher

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#17 - Dockerfile and docker-compose launcher

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#16 - Test genes, exons and tx Ensembl Biomart proxy endpoints

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#15 - Proxy endpoint to Ensembl exons

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#15 - Proxy endpoint to Ensembl exons

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 2 comments

#14 - Fix existing test and add GitHub action that runs pytest

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#14 - Fix existing test and add GitHub action that runs pytest

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#13 - Added Ensembl genes proxy endpoint

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#12 - Ensembl transcripts proxy

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#12 - Ensembl transcripts proxy

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#11 - Fix typing error and use with earlier pythons

Pull Request - State: closed - Opened by northwestwitch almost 2 years ago - 1 comment

#10 - Make schug work as a proxy to Ensembl?

Issue - State: closed - Opened by northwestwitch almost 2 years ago - 6 comments

#10 - Make schug work as a proxy to Ensembl?

Issue - State: closed - Opened by northwestwitch almost 2 years ago - 6 comments

#9 - Populate db and return gene coords

Pull Request - State: closed - Opened by projectoriented almost 3 years ago

#9 - Populate db and return gene coords

Pull Request - State: closed - Opened by projectoriented almost 3 years ago

#8 - feat/load gene databases

Pull Request - State: closed - Opened by Vince-janv almost 3 years ago - 2 comments

#8 - feat/load gene databases

Pull Request - State: closed - Opened by Vince-janv almost 3 years ago - 2 comments

#7 - Feature/ensembl endpoints and db model

Pull Request - State: closed - Opened by projectoriented about 3 years ago - 3 comments

#7 - Feature/ensembl endpoints and db model

Pull Request - State: closed - Opened by projectoriented about 3 years ago - 3 comments

#6 - Database/create ensembl model

Pull Request - State: closed - Opened by projectoriented about 3 years ago

#6 - Database/create ensembl model

Pull Request - State: closed - Opened by projectoriented about 3 years ago

#5 - Create endpoints which return genomic coordinates

Issue - State: open - Opened by Mropat about 3 years ago

#5 - Create endpoints which return genomic coordinates

Issue - State: open - Opened by Mropat about 3 years ago

#4 - Define database models

Issue - State: open - Opened by Mropat about 3 years ago - 1 comment

#3 - Create Dockerfile for the api

Issue - State: closed - Opened by Mropat over 3 years ago

#2 - Create github action for publishing app container on dockerhub

Issue - State: closed - Opened by Mropat over 3 years ago

#1 - Turn cli into rest endpoints

Issue - State: open - Opened by Mropat over 3 years ago - 1 comment