Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / clinical-genomics/balsamic issues and pull requests
#50 - Add flag for mark duplicate in the config file
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
#49 - Changed working directory for jobsubmission
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
Labels: Feature
#49 - Changed working directory for jobsubmission
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
Labels: Feature
#48 - Single mode sample analysis
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#48 - Single mode sample analysis
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#47 - Pisces
Issue -
State: closed - Opened by hassanfa over 6 years ago
#47 - Pisces
Issue -
State: closed - Opened by hassanfa over 6 years ago
#46 - Prepare bed file for analysis
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
#46 - Prepare bed file for analysis
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
#45 - Custom picard quality metircs compiled from source
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#45 - Custom picard quality metircs compiled from source
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#44 - manifest.in for data files
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
#44 - manifest.in for data files
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
#43 - Extra picard metrics and outputs
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#42 - remove install.json
Issue -
State: closed - Opened by hassanfa over 6 years ago
#42 - remove install.json
Issue -
State: closed - Opened by hassanfa over 6 years ago
#41 - Report cli
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#41 - Report cli
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#40 - Add more PCT_TARGET_BASES steps
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
#40 - Add more PCT_TARGET_BASES steps
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
#39 - QC metric after remove duplicate
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 2 comments
#39 - QC metric after remove duplicate
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 2 comments
#38 - QC metric after markduplicate
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 1 comment
#38 - QC metric after markduplicate
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 1 comment
#37 - Fastqc after trimming
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 1 comment
#37 - Fastqc after trimming
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 1 comment
#36 - Sorting data from Picard
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 3 comments
Labels: Feature
#36 - Sorting data from Picard
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 3 comments
Labels: Feature
#35 - Create output directories according to reruns
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#35 - Create output directories according to reruns
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#34 - new log and script path should be created for re-runs
Issue -
State: closed - Opened by hassanfa over 6 years ago
Labels: Bug
#34 - new log and script path should be created for re-runs
Issue -
State: closed - Opened by hassanfa over 6 years ago
Labels: Bug
#33 - An email to be sent when the work flow finishes
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 1 comment
#33 - An email to be sent when the work flow finishes
Issue -
State: closed - Opened by keyvanelhami over 6 years ago
- 1 comment
#32 - Picard memory fix
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#32 - Picard memory fix
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#31 - coverage threshold 5 is missing
Issue -
State: closed - Opened by hassanfa over 6 years ago
Labels: Bug
#31 - coverage threshold 5 is missing
Issue -
State: closed - Opened by hassanfa over 6 years ago
Labels: Bug
#30 - Workflow run status
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 2 comments
Labels: Feature
#30 - Workflow run status
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 2 comments
Labels: Feature
#29 - Two new picard metric rules
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#29 - Two new picard metric rules
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#28 - CollectMultipleMetrics
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
#28 - CollectMultipleMetrics
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
#27 - CollectAlignmentSummaryMetrics
Issue -
State: closed - Opened by hassanfa over 6 years ago
Labels: Feature
#27 - CollectAlignmentSummaryMetrics
Issue -
State: closed - Opened by hassanfa over 6 years ago
Labels: Feature
#26 - Single sample analysis mode
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#25 - Observed vs Expected variant frequency given a set of individual samples (N>=10)
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
#24 - Summary statistics computed on coverage values per exon normalized by per-sample coverage
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
Labels: Feature
#23 - Look into a solution for complex variants
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
#22 - CollectInsertSizeMetrics
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
Labels: Feature
#21 - Single sample mode workflow
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
Labels: Feature
#20 - Single sample mode non-varcaller components
Issue -
State: closed - Opened by hassanfa over 6 years ago
- 1 comment
Labels: Feature
#19 - Single sample mode variant caller rules
Issue -
State: closed - Opened by hassanfa over 6 years ago
Labels: Feature
#18 - Panel analysis bed input
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#17 - Config changes
Pull Request -
State: closed - Opened by hassanfa over 6 years ago
#16 - Config updates
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#15 - First release for testing
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#14 - config and install fix
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#13 - runSbatch
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#12 - Install script update
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#11 - Rule external link
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#10 - Develop
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#9 - Run analysis
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#8 - updated conda envs, sperated vardict, and installation fixed
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#7 - Conda env find
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#6 - Test install
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
- 1 comment
#5 - Mutational signature using deconstructSig
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#4 - Install environment
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
- 3 comments
#3 - BALSAMIC installation
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
- 2 comments
#2 - fixed path to result dir output
Pull Request -
State: closed - Opened by hassanfa almost 7 years ago
#1 - Installation
Issue -
State: closed - Opened by hassanfa almost 7 years ago