Ecosyste.ms: Issues
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GitHub / cianfrocco-lab/COSMIC-CryoEM-Gateway issues and pull requests
#100 - 2D classification fails
Issue -
State: closed - Opened by mcianfrocco about 6 years ago
- 2 comments
Labels: bug
#99 - Globus upload error on gateway
Issue -
State: closed - Opened by mcianfrocco about 6 years ago
- 1 comment
Labels: bug
#98 - URL redirect not working
Issue -
State: closed - Opened by monaw over 6 years ago
- 1 comment
#97 - end point error message
Issue -
State: closed - Opened by monaw over 6 years ago
- 1 comment
#96 - edit job output message
Issue -
State: closed - Opened by monaw over 6 years ago
- 1 comment
#95 - login error
Issue -
State: closed - Opened by monaw over 6 years ago
- 5 comments
#94 - Globus interface allows listing of community account home directory!
Issue -
State: closed - Opened by monaw over 6 years ago
- 6 comments
#93 - Runtime error about invalid proxy
Issue -
State: closed - Opened by monaw over 6 years ago
- 13 comments
#92 - Runtime error
Issue -
State: closed - Opened by monaw over 6 years ago
- 3 comments
#91 - Double check that monitor script will kill jobs that stall at a given resolution
Issue -
State: open - Opened by mcianfrocco almost 7 years ago
Labels: To do
#90 - Transfer stdout & stderr file into globus_transfers directory
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 1 comment
Labels: enhancement
#89 - Deleting data does not work
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 35 comments
Labels: bug
#88 - Error retrieving output results after job completes
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 27 comments
Labels: bug
#87 - Multi-page data listing not working!
Issue -
State: closed - Opened by monaw almost 7 years ago
- 12 comments
#86 - Runtime error in all-gateway.log
Issue -
State: closed - Opened by monaw almost 7 years ago
- 15 comments
Labels: bug
#85 - No choice for globus upload for empty directories
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 1 comment
Labels: bug
#84 - Tasks not staging
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 9 comments
Labels: bug
#83 - Remove relion maximum runtime from task options
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 1 comment
Labels: enhancement
#82 - How to stop users from uploading/transferring to the gateway?
Issue -
State: closed - Opened by monaw almost 7 years ago
- 5 comments
#81 - Remove button from Task summary page: 'Save to current folder'
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 1 comment
Labels: bug
#80 - Setup Google Analytics for the gateway
Issue -
State: closed - Opened by monaw almost 7 years ago
- 10 comments
#79 - Move tools' output directory to advanced with default
Issue -
State: closed - Opened by monaw almost 7 years ago
- 8 comments
Labels: enhancement
#78 - *.star file processing (was "When creating new uploaded Globus data entry, only look 1 level deep for *.star file" )
Issue -
State: closed - Opened by monaw almost 7 years ago
- 18 comments
#77 - How to stop users from submitting/uploading/using gateway?
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 7 comments
Labels: enhancement
#76 - Moving data b/w XSEDE resources with globus-url-copy
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
Labels: enhancement
#75 - Migrate gateway URL to new domain name
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 8 comments
Labels: enhancement
#74 - Folder total storage does not list actual storage used
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 2 comments
Labels: bug
#73 - Benchmarking ISAC
Issue -
State: open - Opened by mcianfrocco almost 7 years ago
Labels: enhancement
#72 - Size of directory on Globus transfer page is not size of directory
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 2 comments
Labels: bug
#71 - Error: Transfer status page after Globus download of directory
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 5 comments
Labels: bug
#70 - Tasks page: CPU-usage & help info do not work
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 19 comments
Labels: bug
#69 - Adding new data input type: .mrcs
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
Labels: enhancement
#68 - Change name of Globus buttons
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 1 comment
Labels: enhancement
#67 - ISAC2 job submission to Comet
Issue -
State: open - Opened by mcianfrocco almost 7 years ago
Labels: enhancement
#66 - Data import: If user uploads file with globus and same path already exists, do not import
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 2 comments
Labels: enhancement
#65 - Add user profile question: allow data mining by gateway?
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
Labels: enhancement
#64 - CIPRES user message RE: country of user
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 5 comments
Labels: bug
#63 - Interactive clicking of directories for finding files to transfer
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 2 comments
Labels: gateway
#62 - Link in completion email is incorrect
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 8 comments
Labels: bug
#61 - Typo on Task creation
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 1 comment
Labels: bug
#60 - Include check box to indicate negative stain vs. cryo-EM data
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
#59 - Create listening script that will monitor job
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
#58 - Scale all 2D classification data to 5 A/pix
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
#57 - Data output: move all completed jobs back into user directory
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
#56 - Copy data for jobs onto scratch directories
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 1 comment
#55 - Add allocations page to describe system for getting computing time
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
#54 - Set computing allocation limits per user
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 36 comments
Labels: enhancement
#53 - Set storage limit for individual users
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 18 comments
Labels: enhancement
#52 - Runtime error when viewing task
Issue -
State: closed - Opened by monaw almost 7 years ago
#51 - Remove SOURCE_DOCUMENT_ID and DATATYPE columns from userdata_dir table
Issue -
State: closed - Opened by monaw almost 7 years ago
- 1 comment
#50 - Create globus tutorial page
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
Labels: enhancement
#49 - User-provided allocation
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 3 comments
Labels: enhancement
#48 - Usage statistic tracking?
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 11 comments
Labels: question
#47 - Link help on user portal to forum Q & A page
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 1 comment
Labels: enhancement
#46 - Remove "We can put the browser upload page here?!"
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 1 comment
Labels: bug
#45 - Move output directory choice to advanced
Issue -
State: closed - Opened by mcianfrocco almost 7 years ago
- 2 comments
Labels: To do
#44 - Display error message if Globus transfer doesn't contain a *.star file
Issue -
State: closed - Opened by monaw almost 7 years ago
- 1 comment
Labels: To do
#43 - Missing information in TransferRecord
Issue -
State: closed - Opened by monaw about 7 years ago
- 2 comments
#42 - Add support email address to error.jsp
Issue -
State: closed - Opened by monaw about 7 years ago
#41 - Globus transfer runtime error
Issue -
State: closed - Opened by monaw about 7 years ago
- 4 comments
#40 - Compare benchmark RELION job on K80 vs. P100
Issue -
State: closed - Opened by mcianfrocco about 7 years ago
Labels: To do
#39 - Incorrect error message for source endpoint list
Issue -
State: closed - Opened by monaw about 7 years ago
#38 - Incorrect error message about Comet
Issue -
State: closed - Opened by monaw about 7 years ago
#37 - Integrate successful Globus Transfer info into CIPRES framework workflow
Issue -
State: closed - Opened by monaw over 7 years ago
#36 - Add user data folder to Globus Transfer task
Issue -
State: closed - Opened by monaw over 7 years ago
- 5 comments
#35 - Add "Pending" and "Succeeded" into Globus transfer status
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 1 comment
Labels: enhancement
#34 - What happens if a user provides files with the same name?
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 2 comments
Labels: question
#33 - Log in error (temporary)
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 3 comments
Labels: bug
#32 - Large globus transfer
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 2 comments
#31 - Open Help link into new tab instead of new window
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 2 comments
Labels: enhancement
#30 - Displayed time from Globus during file transfer
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 3 comments
Labels: enhancement
#29 - Updated endpoint name to Display name instead of UUID
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 12 comments
Labels: enhancement
#28 - User endpoints does not display globus server endpoints, only personal connect endpoints
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 6 comments
Labels: bug
#27 - Displayed data transfer as gigabytes not bytes
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
Labels: enhancement
#26 - Migrate this github repo to cianfrocco-lab
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
Labels: To do
#25 - Welcome message after user logs into gateway
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
Labels: To do
#24 - Create gateway help page
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
Labels: To do
#23 - Create landing page welcome message for logging into gateway
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
Labels: To do
#22 - How to cite us page
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 1 comment
Labels: To do
#21 - Citation link for Relion
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 8 comments
Labels: To do
#20 - Test relion-2.0 job submission onto GPU nodes on Comet
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 1 comment
Labels: enhancement
#19 - Create relion-2.0 job submission pages in Toolkit
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
Labels: enhancement
#18 - Add Globus Transfer
Issue -
State: closed - Opened by monaw over 7 years ago
- 1 comment
Labels: enhancement
#17 - Add Globus Auth feature
Issue -
State: closed - Opened by monaw over 7 years ago
- 1 comment
Labels: enhancement
#16 - Add per command help
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 1 comment
Labels: enhancement
#15 - Gateway Help and How to Cite Us tabs need updating...
Issue -
State: closed - Opened by monaw over 7 years ago
- 4 comments
#14 - Add XSEDE user counting script for gateway job submission
Issue -
State: closed - Opened by monaw over 7 years ago
- 1 comment
#13 - Add code to interface with Globus transfer
Issue -
State: closed - Opened by monaw over 7 years ago
- 1 comment
#12 - Should user account registration work at this point?
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 3 comments
#11 - Update 3D refinement command generated by gateway
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 2 comments
#10 - Tasks messages should be easier to read
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
Labels: enhancement
#9 - Adjust --j threads & ntasks per node based upon memory requirements of job
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
Labels: enhancement
#8 - Accurate approximation of run time
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
Labels: enhancement
#7 - Show user real-time output from stdout.txt
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 2 comments
Labels: enhancement
#6 - ntasks-per-node should be 24 not 15
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 2 comments
Labels: bug
#5 - Change pixel size input to override reading from star file
Issue -
State: closed - Opened by mcianfrocco over 7 years ago
- 2 comments
Labels: enhancement
#4 - Add status display for large file upload via web interface
Issue -
State: closed - Opened by monaw almost 8 years ago
Labels: enhancement
#3 - Upload large 3D volume using web interface
Issue -
State: closed - Opened by mcianfrocco almost 8 years ago
- 2 comments
Labels: To do
#2 - Test submit, status, and cancel python scripts
Issue -
State: closed - Opened by mcianfrocco almost 8 years ago
- 1 comment
Labels: To do
#1 - Task detail doesn't show actual user choose filename
Issue -
State: closed - Opened by monaw almost 8 years ago
- 1 comment
Labels: bug