chrovis/cljam issues and pull requests

#222 - Bump codecov/codecov-action from v1.2.2 to v1.3.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#221 - Bump codecov/codecov-action from v1.2.1 to v1.2.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#220 - Bump actions/cache from v2 to v2.1.4

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#219 - Bump codecov/codecov-action from v1.2.0 to v1.2.1

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#218 - Bump codecov/codecov-action from v1.1.1 to v1.2.0

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#217 - Bump codecov/codecov-action from v1.1.0 to v1.1.1

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#216 - Bump codecov/codecov-action from v1.0.15 to v1.1.0

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#215 - Update java versions for testing

Pull Request - State: closed - Opened by alumi almost 4 years ago

#214 - Bump codecov/codecov-action from v1.0.14 to v1.0.15

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#213 - Bump codecov/codecov-action from v1.0.13 to v1.0.14

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#212 - Add support for indexed? for vcf/bcf.

Pull Request - State: closed - Opened by niyarin almost 4 years ago - 1 comment

#211 - Add support for nclist.

Pull Request - State: closed - Opened by niyarin about 4 years ago - 3 comments

#210 - Bump xcoo/clj-lint-action from v1.1.6 to v1.1.7

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago
Labels: dependencies

#209 - Add support for fast interval finder.

Pull Request - State: closed - Opened by niyarin about 4 years ago - 8 comments
Labels: enhancement

#208 - Bump codecov/codecov-action from v1.0.12 to v1.0.13

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#207 - Bump codecov/codecov-action from v1.0.10 to v1.0.12

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#206 - Bump codecov/codecov-action from v1.0.10 to v1.0.11

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 2 comments
Labels: dependencies

#205 - Bump codecov/codecov-action from v1.0.3 to v1.0.10

Pull Request - State: closed - Opened by dependabot[bot] about 4 years ago - 1 comment
Labels: dependencies

#204 - Introduce GitHub Dependabot to keep dependencies up to date

Pull Request - State: closed - Opened by r6eve about 4 years ago - 2 comments

#203 - Update the version of lint-action to read the clj-kondo config file.

Pull Request - State: closed - Opened by niyarin over 4 years ago - 1 comment

#202 - Refactor cljam.io.csi

Pull Request - State: closed - Opened by alumi over 4 years ago - 2 comments
Labels: enhancement

#201 - Refactor cljam.io.util.bin

Pull Request - State: closed - Opened by alumi over 4 years ago - 4 comments
Labels: enhancement

#200 - Add support cloning VCF/BCF.

Pull Request - State: closed - Opened by niyarin over 4 years ago - 2 comments

#199 - Run lein check on CI

Pull Request - State: closed - Opened by alumi over 4 years ago

#198 - Add base_sha option to clj-lint-action.

Pull Request - State: closed - Opened by niyarin over 4 years ago - 4 comments

#197 - Create an index file while writing a sorted BAM file

Pull Request - State: closed - Opened by xckitahara over 4 years ago - 7 comments
Labels: enhancement

#190 - Add support for generating CSI file from bgzip compressed VCF.

Pull Request - State: closed - Opened by niyarin over 4 years ago - 12 comments
Labels: enhancement

#189 - Replace memoizing cache for parsed CIGARs with core.memoize's LU cache

Pull Request - State: closed - Opened by athos over 4 years ago - 1 comment

#188 - Improvement for pileup memory usage

Pull Request - State: closed - Opened by athos over 4 years ago - 3 comments
Labels: enhancement

#187 - Add support for random reading of a bcf file.

Pull Request - State: closed - Opened by niyarin over 4 years ago - 4 comments

#186 - Improve performance for reading string from BCF.

Pull Request - State: closed - Opened by niyarin over 4 years ago - 7 comments
Labels: enhancement

#185 - Fix float reader for specific environments such as IcedTea.

Pull Request - State: closed - Opened by niyarin over 4 years ago - 4 comments
Labels: bug

#184 - Fix a bug in reading bgzipped VCF files

Pull Request - State: closed - Opened by alumi almost 5 years ago - 3 comments
Labels: bug

#183 - Detect the latest build number of OpenJDK EA

Pull Request - State: closed - Opened by alumi almost 5 years ago - 1 comment

#182 - Add support for CSI reader.

Pull Request - State: closed - Opened by niyarin almost 5 years ago - 10 comments
Labels: enhancement

#181 - Migrate CI to GitHub Actions

Pull Request - State: closed - Opened by r6eve almost 5 years ago - 1 comment
Labels: enhancement

#180 - Add support for random reading of vcf file.

Pull Request - State: closed - Opened by niyarin almost 5 years ago - 5 comments
Labels: enhancement

#179 - Avoid an ArityException on creating an index for BAM files without alignments

Pull Request - State: closed - Opened by alumi about 5 years ago - 2 comments
Labels: bug

#178 - Fix creating temp directory to support multiple users

Pull Request - State: closed - Opened by r6eve about 5 years ago - 8 comments

#177 - Fix grammar

Pull Request - State: closed - Opened by r6eve about 5 years ago - 1 comment

#176 - Fix minor typos

Pull Request - State: closed - Opened by r6eve about 5 years ago

#175 - Fix reflection warnings

Pull Request - State: closed - Opened by r6eve about 5 years ago - 2 comments

#174 - Add support for random reading of bgzipped FASTA files.

Pull Request - State: closed - Opened by alumi about 5 years ago - 2 comments
Labels: enhancement

#173 - Fix decoding of long CIGAR ops in BAM

Pull Request - State: closed - Opened by alumi about 5 years ago - 1 comment
Labels: bug

#172 - Fix nonintentional paths

Pull Request - State: closed - Opened by r6eve about 5 years ago - 1 comment
Labels: bug

#171 - Add content-based file type detection

Pull Request - State: closed - Opened by alumi about 5 years ago - 3 comments
Labels: enhancement

#170 - Provide a default file format version for BCF

Pull Request - State: closed - Opened by alumi over 5 years ago - 6 comments
Labels: bug

#169 - Ignore undeclared keys in INFO and FORMAT when writing BCF files

Pull Request - State: closed - Opened by alumi over 5 years ago - 1 comment
Labels: bug

#168 - Fix bugs in BCF I/O

Pull Request - State: closed - Opened by alumi over 5 years ago - 4 comments
Labels: bug

#167 - Fix I/O of variants with empty info/individual fields

Pull Request - State: closed - Opened by alumi over 5 years ago - 2 comments
Labels: bug

#142 - Support CIGARs longer than 65535 operations

Issue - State: closed - Opened by alumi about 6 years ago
Labels: enhancement

#141 - Create an index file while writing a sorted BAM file

Issue - State: closed - Opened by alumi about 6 years ago - 1 comment
Labels: enhancement

#61 - Add tests to check generated data correctness

Issue - State: closed - Opened by ayamada over 7 years ago - 6 comments

GitHub / chrovis/cljam issues and pull requests