chrisrackauckas/askem_evaluation_staging issues and pull requests

#92 - Add forecasting plot in scenario 1

Pull Request - State: open - Opened by Vaibhavdixit02 almost 2 years ago

#91 - add Pluto notebooks

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#90 - simple sir: add underreporting explanation

Pull Request - State: closed - Opened by paulflang almost 2 years ago

#89 - add a bunch of analysis of the results

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#88 - add a section explaining the SIR fit result

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#87 - Add in S2 P2 tau1 and tau2

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#86 - read S3Q5 from JSON

Pull Request - State: closed - Opened by ArnoStrouwen almost 2 years ago

#85 - implement tau1, tau2 parameters from the paper (scenario 2)

Pull Request - State: closed - Opened by JeffBezanson almost 2 years ago - 1 comment

#84 - Code clean up for S3

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#83 - Finish 2.b.ii

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#82 - Added JSONs for models stratified by 11age groups

Pull Request - State: closed - Opened by p-stokes almost 2 years ago

#81 - Finish up S2 b.i

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#80 - Plot D and H in S3/Q2

Issue - State: closed - Opened by YingboMa almost 2 years ago

#79 - add data for Q4

Pull Request - State: open - Opened by paulflang almost 2 years ago

#78 - Incorporated new AlgPetri API for models in S3. Updated make file to …

Pull Request - State: closed - Opened by p-stokes almost 2 years ago

#77 - Convert sirhd_vax to an MTK model

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#76 - Finish Q2

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#75 - Updated SIDARTHE-V model with extra transition

Pull Request - State: closed - Opened by p-stokes almost 2 years ago - 2 comments

#74 - data S3 Q3

Pull Request - State: closed - Opened by paulflang almost 2 years ago

#73 - Pas/s3 update json paths

Pull Request - State: closed - Opened by p-stokes almost 2 years ago - 1 comment

#72 - WIP: switch S3 to TA-2 models

Pull Request - State: closed - Opened by JeffBezanson almost 2 years ago

#71 - Added Graphviz_jll to Project.toml

Pull Request - State: closed - Opened by p-stokes almost 2 years ago

#70 - Prettify sensitivity plot

Pull Request - State: closed - Opened by YingboMa almost 2 years ago - 2 comments

#69 - Scenario 2 Question 2.b

Issue - State: closed - Opened by liunelson almost 2 years ago - 2 comments

#68 - Scenario 2 Question 1.c

Issue - State: closed - Opened by liunelson almost 2 years ago - 2 comments

#67 - add data Scenario 3, Q1

Pull Request - State: closed - Opened by ArnoStrouwen almost 2 years ago - 1 comment

#66 - Added fix to plot mca and new complement

Pull Request - State: closed - Opened by p-stokes almost 2 years ago

#65 - Use uncertainity forecast instead of solve

Pull Request - State: closed - Opened by Vaibhavdixit02 almost 2 years ago - 2 comments

#64 - Modified S3 JSONs for new SIRHD

Pull Request - State: closed - Opened by p-stokes almost 2 years ago

#63 - Added lines to S3 to read in the models from JSON

Pull Request - State: closed - Opened by p-stokes almost 2 years ago - 1 comment

#62 - Usability & Help a new Programmer to get started

Issue - State: closed - Opened by kellertuer almost 2 years ago - 3 comments

#61 - Added JSONs of models for S3

Pull Request - State: closed - Opened by p-stokes almost 2 years ago

#60 - scenario 2 with TA-2 models

Pull Request - State: closed - Opened by JeffBezanson almost 2 years ago

#59 - Pas/s2 ta2 incorp

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#58 - Fix contact matrix in 1.c.v

Pull Request - State: closed - Opened by Keno almost 2 years ago

#57 - Don't merge: Use R0 from the paper

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#56 - Correct typo: ε is epsilon

Pull Request - State: closed - Opened by YingboMa almost 2 years ago - 1 comment

#55 - More prettificiation

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#54 - Minor scenario 1 fixes

Pull Request - State: closed - Opened by Keno almost 2 years ago

#53 - Added SIR model with simulation and plot to S3

Pull Request - State: closed - Opened by p-stokes almost 2 years ago - 1 comment

#52 - Finish ii.b with crude R0

Pull Request - State: closed - Opened by YingboMa almost 2 years ago - 1 comment

#51 - Added JSON for SIDARTHE model

Pull Request - State: closed - Opened by p-stokes almost 2 years ago

#50 - Incorporating TA2 components

Pull Request - State: closed - Opened by p-stokes almost 2 years ago - 1 comment

#49 - redo scenario 1 using TA-2 models and tools

Pull Request - State: closed - Opened by JeffBezanson almost 2 years ago - 1 comment

#48 - Pretty-fy Scenarios 2 and 3

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#47 - More comparison plots

Issue - State: closed - Opened by Keno almost 2 years ago

#46 - Complete 2.b.i

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#45 - Go through and cleanup Scenario 1

Pull Request - State: closed - Opened by Keno almost 2 years ago - 1 comment

#44 - annotate more of scenarios 2 and 3

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#43 - Solve 1.d

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#42 - analyse effects of events

Pull Request - State: closed - Opened by paulflang almost 2 years ago

#41 - Build all scenarios

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#40 - Finish sensitivity analysis

Pull Request - State: closed - Opened by YingboMa almost 2 years ago - 1 comment

#39 - add a note on the definition of R0 for scenario 2

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#38 - add a description of the first parts of scenario 2

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#37 - Fix build deployment typo

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#36 - add a bunch of annotations to the Scenario 2 results file

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#35 - Unit test 1 requires no events

Pull Request - State: closed - Opened by YingboMa almost 2 years ago - 1 comment

#34 - fixcase1

Pull Request - State: closed - Opened by paulflang almost 2 years ago

#33 - Add SBML bound

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#32 - add unit test #1

Pull Request - State: closed - Opened by paulflang almost 2 years ago - 1 comment

#31 - Update README.md

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#30 - cherrypick scenario2 improvements

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#29 - S1: Fix NT typo

Pull Request - State: closed - Opened by Keno almost 2 years ago - 1 comment

#28 - Cherrypick fixes for Scenario 1 build

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#27 - try building scenario 3

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago - 1 comment

#26 - try building scenario 2 documents

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago - 1 comment

#25 - fix scenario1 sys construction

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago - 1 comment

#24 - Cleanup

Pull Request - State: closed - Opened by Keno almost 2 years ago

#23 - Delete TODO as resolved by agreement with TA2

Pull Request - State: closed - Opened by Keno almost 2 years ago - 1 comment

#22 - Import data and finish Scenario 1

Pull Request - State: closed - Opened by Keno almost 2 years ago

#21 - Setup the SIDARTHE-V analyses

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#20 - How is R0 defined in terms of the states? (Scenario 2)

Issue - State: closed - Opened by ChrisRackauckas almost 2 years ago - 10 comments

#19 - What are the intervention parameters? (Scenario 2)

Issue - State: closed - Opened by ChrisRackauckas almost 2 years ago

#18 - Starting scenario 2

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#17 - Starting scenario 2

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#16 - Starting scenario 2

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#15 - Starting scenario 2

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#14 - Small typo fixes

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago - 1 comment

#13 - Small typo fixes

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#12 - Finish problem 1

Pull Request - State: closed - Opened by YingboMa almost 2 years ago - 1 comment

#11 - giordano2020

Pull Request - State: closed - Opened by anandijain almost 2 years ago - 6 comments

#10 - Completing Scenario 2

Issue - State: closed - Opened by ChrisRackauckas almost 2 years ago

#9 - Implement contact matrix

Pull Request - State: closed - Opened by YingboMa almost 2 years ago

#8 - Completing round 1 of Scenario 2

Issue - State: closed - Opened by ChrisRackauckas almost 2 years ago - 3 comments

#7 - add contact matrix data

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago - 1 comment

#6 - Completing Scenario 1

Issue - State: closed - Opened by ChrisRackauckas almost 2 years ago - 7 comments

#5 - Completing round 1 of scenario 1

Issue - State: closed - Opened by ChrisRackauckas almost 2 years ago

#4 - Completing Scenario 3

Issue - State: open - Opened by ChrisRackauckas almost 2 years ago - 10 comments

#3 - Completing round 1 of scenario 3

Issue - State: open - Opened by ChrisRackauckas almost 2 years ago - 1 comment

#2 - add evaluation PDFs

Pull Request - State: closed - Opened by ChrisRackauckas almost 2 years ago

#1 - can you add the full doc that explains what needs to be done for each scenario (2 specifically)?

Issue - State: closed - Opened by anandijain almost 2 years ago

GitHub / chrisrackauckas/askem_evaluation_staging issues and pull requests