chriscainx/mnnpy issues and pull requests

#56 - Unexpected keyword argument {'n_jobs': 8}

Issue - State: open - Opened by Tester3454 about 1 year ago

#55 - have doubt with parameter svd_dim?

Issue - State: open - Opened by yuxiaokang-source over 1 year ago

#54 - Error when packing anndata object?

Issue - State: open - Opened by cameronyoungpark over 1 year ago

#53 - Unexpected keyword argument {'n_jobs' ...}

Issue - State: open - Opened by yjkweon24 almost 2 years ago - 2 comments

#52 - added instructions for an installation fix

Pull Request - State: closed - Opened by AlexandreHutton about 2 years ago - 1 comment

#51 - jupyterlab died when Adjusting variance...

Issue - State: open - Opened by brainfo over 2 years ago

#50 - Unexpected keyword argument {'n_jobs': 20}

Issue - State: open - Opened by DRSEI over 2 years ago - 1 comment

#49 - scipy cKDTree: `n_jobs` has been renamed `workers`

Issue - State: open - Opened by alexlenail over 2 years ago - 1 comment

#48 - Use kwarg `workers` not `n_jobs` for `cKDTree`

Pull Request - State: closed - Opened by scottgigante-immunai over 2 years ago

#47 - Illegal instruction (core dumped)

Issue - State: open - Opened by nitinnarwade over 2 years ago - 1 comment

#46 - Another issue with installation

Issue - State: open - Opened by sfhill almost 3 years ago

#45 - python 3.8.8 imports version 0.1.9.5 failed

Issue - State: open - Opened by brainfo over 3 years ago

#44 - adding ability to add multiple values of k

Pull Request - State: open - Opened by jkobject over 3 years ago

#43 - Update utils.py

Pull Request - State: open - Opened by HelloWorldLTY over 3 years ago

#42 - arrays used as indices must be of integer (or boolean) type

Issue - State: open - Opened by aheravi over 4 years ago - 12 comments

#41 - Fix to address Numba errors

Pull Request - State: closed - Opened by pinin4fjords over 4 years ago - 1 comment

#40 - Add `verbose` keyword argument

Issue - State: open - Opened by scottgigante over 4 years ago

#39 - Require numba 0.45, temporary fix for #30

Pull Request - State: open - Opened by scottgigante over 4 years ago

#38 - Taking len of `None` when passing matrices instead of anndata

Issue - State: open - Opened by scottgigante over 4 years ago - 1 comment

#37 - Multiprocessing error

Issue - State: open - Opened by sichra over 4 years ago

#36 - mnn_correct doesn't integrate data

Issue - State: open - Opened by jayypaul almost 5 years ago

#35 - NumbaDeprecationWarning

Issue - State: open - Opened by jayypaul almost 5 years ago - 1 comment

#34 - mutliple sets of data using mnn_correct

Issue - State: closed - Opened by Zifeng-L almost 5 years ago - 2 comments

#33 - mnn_correct gives several Numba warnings and IndexError

Issue - State: open - Opened by auesro almost 5 years ago - 2 comments

#32 - resolved an installation issue

Pull Request - State: closed - Opened by tamjazad almost 5 years ago

#31 - Overflow error

Issue - State: open - Opened by dawe almost 5 years ago

#30 - IndexError

Issue - State: open - Opened by adamgayoso about 5 years ago - 3 comments

#29 - Failed building wheel for mnnpy

Issue - State: closed - Opened by redst4r over 5 years ago - 1 comment

#28 - Index out of bounds, Looking for MNN not working.

Issue - State: open - Opened by Ayush-Praveen over 5 years ago - 1 comment

#27 - mnnpy.mnn_correct returning a Tuple

Issue - State: open - Opened by Gpasquini over 5 years ago - 1 comment

#26 - Error when running a correction with two batches

Issue - State: closed - Opened by SamueleSoraggi over 5 years ago - 2 comments

#25 - Please make clear of data format required for this software

Issue - State: open - Opened by noobCoding over 5 years ago

#24 - mnnpy fails to import with latest version of numba

Issue - State: open - Opened by sinclaircooper over 5 years ago - 5 comments

#23 - var_adj / adjust_shift_variance -- is it important / what does it do?

Issue - State: open - Opened by atarashansky over 5 years ago

#22 - Is Gaussian kernel being calculated correctly?

Issue - State: open - Opened by dylkot almost 6 years ago

#21 - Union versus intersection of highly variable genes

Issue - State: open - Opened by LisaSikkema almost 6 years ago

#20 - Update utils.py to solve error when cos_norm_out = False

Pull Request - State: closed - Opened by LisaSikkema almost 6 years ago - 1 comment

#19 - Reproducibility of batch correction

Issue - State: open - Opened by sophiamaedler about 6 years ago

#18 - Not be able to install

Issue - State: open - Opened by ivonyao over 6 years ago - 1 comment

#17 - OverflowError: cannot serialize a bytes object larger than 4 GiB

Issue - State: closed - Opened by yxaxaxa over 6 years ago - 6 comments

#16 - error when set cos_norm_out=False

Issue - State: open - Opened by yupingz over 6 years ago - 3 comments

#15 - Does not install on macOS

Issue - State: open - Opened by veghp over 6 years ago - 13 comments

#14 - comput_angle=True generates error

Issue - State: open - Opened by chlee-tabin over 6 years ago - 1 comment

#13 - input data type

Issue - State: open - Opened by wangjiawen2013 over 6 years ago - 5 comments

#12 - mnnpy returns

Issue - State: open - Opened by wangjiawen2013 over 6 years ago - 3 comments

#11 - Default sigma value

Issue - State: closed - Opened by yueqiw over 6 years ago - 2 comments

#10 - out_batches not being set in transform_input_data() with cos_norm_out=False

Issue - State: open - Opened by ktpolanski over 6 years ago - 2 comments

#9 - no response at Performing cosine normalization...

Issue - State: open - Opened by zacharylau10 over 6 years ago - 5 comments

#8 - improve readme

Issue - State: open - Opened by stashkov almost 7 years ago - 1 comment

#7 - Cython module _utils not initialized. Fallback to python.

Issue - State: open - Opened by stashkov almost 7 years ago - 2 comments

#6 - Cosine Normalization error

Issue - State: open - Opened by julien-kann almost 7 years ago - 8 comments

#5 - fortmat for HVG file

Issue - State: closed - Opened by ypzz almost 7 years ago - 1 comment

#4 - Error during cosine normalization step

Issue - State: open - Opened by LucasESBS almost 7 years ago - 5 comments

#3 - invalid input dtype (input must be float64 or complex128)

Issue - State: open - Opened by dylkot almost 7 years ago - 2 comments

#2 - Openmp multithread

Pull Request - State: closed - Opened by chriscainx almost 7 years ago

#1 - Cythonized adjust_shift_variance for performance

Pull Request - State: closed - Opened by chriscainx almost 7 years ago

GitHub / chriscainx/mnnpy issues and pull requests