Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / chop-dbhi/varify issues and pull requests
#397 - Add genome version to sample and variant resources
Pull Request -
State: closed - Opened by naegelyd almost 10 years ago
- 1 comment
#396 - Stats model required.
Issue -
State: closed - Opened by hassanNS almost 10 years ago
- 6 comments
Labels: status:wontfix
#395 - Update Varify to support version 0.4.0 of vdw
Issue -
State: closed - Opened by naegelyd almost 10 years ago
- 1 comment
Labels: type:bug, type:refactor, version 0.1
#394 - Create new Avocado metadata migration with null translators
Issue -
State: open - Opened by naegelyd almost 10 years ago
Labels: type:feature, version 0.1
#393 - Removing last surviving references to CoffeeScript
Pull Request -
State: closed - Opened by naegelyd almost 10 years ago
- 1 comment
#392 - Fix errata in README.md
Issue -
State: open - Opened by monop almost 10 years ago
#391 - Fix case where sample modal sort direction was opposite of indicator
Pull Request -
State: closed - Opened by naegelyd almost 10 years ago
- 1 comment
#390 - Sample sort direction is opposite of indicator
Issue -
State: closed - Opened by naegelyd almost 10 years ago
Labels: type:bug, version 0.1
#389 - Add genome version to sample and variant resources
Issue -
State: closed - Opened by bruth almost 10 years ago
- 3 comments
Labels: status:needinfo, type:feature, version 0.1
#388 - Headless tests need to be reworked for latest version of varify
Issue -
State: open - Opened by hassanNS almost 10 years ago
- 1 comment
Labels: version 0.1, type:test
#387 - Performance problem due to redundant queries
Issue -
State: open - Opened by murphyke almost 10 years ago
- 1 comment
Labels: type:refactor, version 0.1
#386 - Set sample from context when absent in workspace
Pull Request -
State: closed - Opened by naegelyd almost 10 years ago
- 1 comment
#385 - Workspace doesn't refresh when navigated to from another page
Issue -
State: closed - Opened by naegelyd almost 10 years ago
Labels: type:bug, version 0.1
#384 - Embed a SolveBio variant-detail dashboard
Pull Request -
State: closed - Opened by davecap almost 10 years ago
- 7 comments
#383 - Wait until samples sync to set sample label in results workflow
Pull Request -
State: closed - Opened by naegelyd almost 10 years ago
#382 - Limit cohort formatter to cohorts from projects user has permision for
Pull Request -
State: closed - Opened by naegelyd almost 10 years ago
#381 - Update samplesInContext utility method to handle bare sample IDs
Pull Request -
State: closed - Opened by naegelyd almost 10 years ago
#380 - Sample label shows "undefined" in results toolbar for single sample
Issue -
State: closed - Opened by naegelyd almost 10 years ago
Labels: type:bug, version 0.1
#379 - Fix issue where cohort popover lost scrolling on overflow
Pull Request -
State: closed - Opened by naegelyd almost 10 years ago
#378 - Allow users to select multiple samples
Pull Request -
State: closed - Opened by naegelyd almost 10 years ago
- 1 comment
#377 - Cohort sample popover no longer has constrained height and scrolling
Issue -
State: closed - Opened by naegelyd almost 10 years ago
Labels: type:bug, version 0.1
#376 - Cohort formatter does not restrict cohort list when request user is present
Issue -
State: closed - Opened by naegelyd about 10 years ago
Labels: type:bug, version 0.1
#375 - Add cancel button to sample modal
Pull Request -
State: closed - Opened by naegelyd about 10 years ago
#374 - Add multi-sample selection to the sample chooser modal
Issue -
State: closed - Opened by naegelyd about 10 years ago
Labels: type:feature, version 0.1
#373 - Use explicit comparison when parsing result genes
Pull Request -
State: closed - Opened by naegelyd about 10 years ago
- 1 comment
#372 - All gene symbols appear as "Unknown" in results table
Issue -
State: closed - Opened by naegelyd about 10 years ago
Labels: type:bug, version 0.1
#371 - Add cancel button to sample selection modal
Issue -
State: closed - Opened by naegelyd about 10 years ago
Labels: type:feature, version 0.1
#370 - Limit frequencies to cohorts in projects users have permissions on
Pull Request -
State: closed - Opened by naegelyd about 10 years ago
- 1 comment
#369 - Restrict cohorts to those for projects user has access to
Issue -
State: closed - Opened by naegelyd about 10 years ago
Labels: type:feature, version 0.1
#368 - Clarify in UI that frequencies are cohort frequencies and NOT genotype/allele freqs
Issue -
State: closed - Opened by naegelyd about 10 years ago
- 1 comment
#367 - Move bench/ to vdw
Issue -
State: closed - Opened by naegelyd about 10 years ago
- 1 comment
#366 - Add new SolveBio "Dashboard" to variant detail view
Pull Request -
State: closed - Opened by davecap about 10 years ago
- 11 comments
#365 - Resource tests required
Issue -
State: closed - Opened by hassanNS about 10 years ago
#364 - Added resource test cases
Pull Request -
State: closed - Opened by hassanNS about 10 years ago
- 10 comments
#363 - Provide local CSS when external CDN fails
Pull Request -
State: closed - Opened by ryanjohara about 10 years ago
- 5 comments
#362 - Provide local CSS when external CDN fails
Pull Request -
State: closed - Opened by ryanjohara about 10 years ago
- 5 comments
#361 - Don't hide loading overlay until variant data is returned
Pull Request -
State: closed - Opened by naegelyd about 10 years ago
- 2 comments
#360 - Disable Alamut button if nothing is running on port 10000
Issue -
State: open - Opened by ryanjohara about 10 years ago
Labels: type:bug, version 0.1
#359 - Update Docs to include varify-data-warehouse and instructions of use.
Issue -
State: closed - Opened by hassanNS about 10 years ago
- 1 comment
#358 - Loading indicator on results page is cleared before results are displayed
Issue -
State: closed - Opened by naegelyd about 10 years ago
Labels: type:bug, version 0.1
#357 - Update templates and tests to comply with schema changes
Pull Request -
State: closed - Opened by awenocur about 10 years ago
#356 - Integrate JBrowse into Varify
Pull Request -
State: closed - Opened by ryanjohara about 10 years ago
- 12 comments
#355 - Genotypes are shown as numbers instead of text
Issue -
State: closed - Opened by hassanNS about 10 years ago
- 1 comment
#354 - handler issue while loading samples and using queue command
Issue -
State: closed - Opened by hassanNS about 10 years ago
- 2 comments
#353 - Update varify to leverage varify-data-warehouse
Pull Request -
State: closed - Opened by naegelyd about 10 years ago
- 7 comments
#352 - Add fallback code for libraries loaded via CDN
Issue -
State: open - Opened by naegelyd about 10 years ago
- 1 comment
Labels: version:future, type:feature
#351 - Resolving Test Case Clashes
Issue -
State: closed - Opened by awenocur about 10 years ago
- 2 comments
Labels: status:deferred, type:community
#350 - Add support for regions in gene sets
Issue -
State: open - Opened by naegelyd about 10 years ago
- 1 comment
Labels: type:feature, version 0.1
#349 - Add support for result/variant sets
Pull Request -
State: closed - Opened by naegelyd about 10 years ago
- 8 comments
#348 - Added create_db management command
Pull Request -
State: closed - Opened by hassanNS about 10 years ago
#347 - Changes to Travis file and settings
Pull Request -
State: closed - Opened by hassanNS about 10 years ago
#346 - Duplicate display of genotypes for heterozygous alternate calls on variant-sets
Issue -
State: closed - Opened by awenocur about 10 years ago
- 2 comments
Labels: type:bug, version 0.1
#344 - Remove unused variants management commands
Pull Request -
State: closed - Opened by naegelyd about 10 years ago
- 1 comment
#343 - Replace variant resource SolveBio queries with JS dashboard code
Pull Request -
State: closed - Opened by davecap about 10 years ago
- 7 comments
#341 - Issue 322
Pull Request -
State: closed - Opened by awenocur about 10 years ago
- 2 comments
#338 - Integrate JBrowse into Varify as Alamut replacement
Issue -
State: open - Opened by ryanjohara over 10 years ago
- 3 comments
#336 - Reduce result template to include only data used by client
Pull Request -
State: closed - Opened by ryanjohara over 10 years ago
- 3 comments
#333 - RQ Workers fail to load samples due to get_cache failure
Issue -
State: closed - Opened by hassanNS over 10 years ago
- 6 comments
Labels: status:needinfo, version 0.1
#328 - Headless Test Needed to Verify Issue 286
Issue -
State: open - Opened by lcdavidson over 10 years ago
Labels: type:test
#327 - second attempt to add the VCF exporter
Pull Request -
State: closed - Opened by awenocur over 10 years ago
- 20 comments
#325 - Position sorting broken
Issue -
State: closed - Opened by leipzig over 10 years ago
- 1 comment
Labels: type:bug, version 0.1
#322 - add workaround to readme: LLVM 5.1 interferes with installation of requirements
Issue -
State: closed - Opened by awenocur over 10 years ago
- 2 comments
Labels: type:docs, version 0.1
#318 - Headless Test for Varify Issue 224
Issue -
State: open - Opened by lcdavidson over 10 years ago
Labels: type:test
#310 - Loader does not support single number AD fields
Issue -
State: closed - Opened by naegelyd over 10 years ago
- 2 comments
Labels: type:bug, version 0.1
#305 - Proposal for a revised schema: more efficient and consistent internal storage of ref/alt sequences
Issue -
State: closed - Opened by awenocur over 10 years ago
- 16 comments
#302 - Updated Phenotype modal
Pull Request -
State: closed - Opened by hassanNS over 10 years ago
- 16 comments
#299 - Update dependencies
Issue -
State: open - Opened by naegelyd over 10 years ago
Labels: type:refactor, version 0.1
#297 - Progress for Variant importer from spreadsheet
Pull Request -
State: closed - Opened by hassanNS over 10 years ago
- 6 comments
#295 - Split Varify into multiple apps
Issue -
State: closed - Opened by naegelyd over 10 years ago
- 1 comment
Labels: type:idea, version 0.1
#290 - Remove system_site_packages flag in travis config
Pull Request -
State: closed - Opened by naegelyd over 10 years ago
#289 - Convert cohort_variant and result primary key types to bigint
Pull Request -
State: closed - Opened by ryanjohara over 10 years ago
- 17 comments
#282 - Exclude null values when filtering using range control
Issue -
State: closed - Opened by naegelyd over 10 years ago
- 6 comments
Labels: type:bug, version 0.1
#277 - Implement SampleDialog for new method of selecting a sample
Pull Request -
State: closed - Opened by bruth over 10 years ago
- 1 comment
#274 - 0/1 1/1 genotypes are a VCF abstract, we should store nucleotides
Issue -
State: closed - Opened by leipzig over 10 years ago
- 4 comments
Labels: version:1.0, type:refactor
#273 - Move contents of global_settings to settings
Pull Request -
State: closed - Opened by bruth over 10 years ago
#249 - Changed tests to use fixtures, added gene testcase and fixed bug w/ gene resources
Pull Request -
State: closed - Opened by hassanNS over 10 years ago
- 4 comments
#241 - Optimize the SolveBio ClinVar query to prevent slow variant resource requests
Pull Request -
State: closed - Opened by davecap over 10 years ago
#239 - Reduce result template to include only the data used by the client
Issue -
State: closed - Opened by naegelyd over 10 years ago
- 1 comment
Labels: version:1.0, status:needinfo, type:refactor
#237 - Excel and CSV formatters should use same column order and column set
Issue -
State: closed - Opened by naegelyd over 10 years ago
- 2 comments
Labels: type:refactor, version 0.1
#234 - Change non-loader tests to use fixture
Issue -
State: closed - Opened by naegelyd over 10 years ago
- 3 comments
Labels: type:refactor, version 0.1
#223 - Reset cohort_variant when updating allele frequencies
Pull Request -
State: closed - Opened by ryanjohara over 10 years ago
- 3 comments
#211 - Increase test performance
Issue -
State: closed - Opened by naegelyd over 10 years ago
- 1 comment
Labels: version:1.0, type:idea
#210 - Correct close button height in results modal
Pull Request -
State: closed - Opened by ryanjohara over 10 years ago
#174 - Port utils to JavaScript
Pull Request -
State: closed - Opened by naegelyd over 10 years ago
- 1 comment
#171 - Glacial query performance with gene sets
Issue -
State: closed - Opened by mitalia over 10 years ago
- 3 comments
Labels: status:needinfo, version 0.1
#146 - Removing load off the database during VCF processing
Issue -
State: closed - Opened by bruth over 10 years ago
- 6 comments
Labels: version:future, type:refactor
#140 - Add additional information to distinguish samples
Issue -
State: closed - Opened by mitalia over 10 years ago
- 1 comment
Labels: version:future, status:needinfo
#137 - Fix problems reading data from PyVCF call objects
Pull Request -
State: closed - Opened by naegelyd over 10 years ago
#135 - "The Loader" needs improved tests to fully cover all cases
Issue -
State: closed - Opened by naegelyd over 10 years ago
- 1 comment
Labels: version:1.0, type:refactor
#134 - Update API resources to use Serrano's base resource class
Pull Request -
State: closed - Opened by bruth over 10 years ago
#112 - Force user to select a sample
Pull Request -
State: closed - Opened by naegelyd over 10 years ago
#98 - Remove Project field from Sample concept
Pull Request -
State: closed - Opened by naegelyd over 10 years ago
#91 - Ability to display QC Data is missing
Issue -
State: open - Opened by mitalia over 10 years ago
- 1 comment
Labels: version:1.0, type:feature
#78 - Add result id field and variant result id concept to fixture
Pull Request -
State: closed - Opened by naegelyd over 10 years ago
- 1 comment
#54 - Consolidate avocado metadata migrations into single one
Pull Request -
State: closed - Opened by naegelyd over 10 years ago
- 1 comment
#37 - Show the sample name in the results toolbar when it is available
Pull Request -
State: closed - Opened by naegelyd over 10 years ago
- 1 comment
#23 - Implement custom results workflow, remove analysis workflow
Pull Request -
State: closed - Opened by naegelyd over 10 years ago
- 4 comments
#13 - Add support for Django 1.5
Issue -
State: closed - Opened by naegelyd almost 11 years ago
- 4 comments
Labels: type:refactor, version 0.1
#9 - Add ability to (re)queue particular stages in the pipeline
Issue -
State: closed - Opened by naegelyd almost 11 years ago
- 2 comments
Labels: version:future, type:feature
#4 - Add support for pipeline webhooks
Issue -
State: closed - Opened by bruth almost 11 years ago
- 1 comment
Labels: version:future, type:feature