Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / chemreac/chemreac issues and pull requests

#115 - specify branch for git module

Pull Request - State: open - Opened by bjodah over 3 years ago

#114 - jtimes_setup

Pull Request - State: closed - Opened by bjodah almost 4 years ago

#113 - Dev bump ci and pycvodes

Pull Request - State: closed - Opened by bjodah over 4 years ago

#112 - bump CI to focal

Pull Request - State: closed - Opened by bjodah over 4 years ago

#111 - sundials-5.1.0

Pull Request - State: closed - Opened by bjodah over 4 years ago

#110 - Debug failure on 3.2.1

Pull Request - State: closed - Opened by bjodah almost 5 years ago

#109 - stab-lim-det

Pull Request - State: closed - Opened by bjodah about 5 years ago

#108 - implement get_dx_max and get_dx0 (#107)

Pull Request - State: closed - Opened by bjodah about 5 years ago

#107 - implement get_dx_max and get_dx0

Pull Request - State: closed - Opened by bjodah over 5 years ago

#106 - CI: refactor for new CI service (#104)

Pull Request - State: closed - Opened by bjodah over 5 years ago

#105 - Implement step size limit

Pull Request - State: closed - Opened by bjodah over 5 years ago

#104 - CI: refactor for new CI service

Pull Request - State: closed - Opened by bjodah over 5 years ago

#103 - Warn if fields given & doserate/density in vars (#102)

Pull Request - State: closed - Opened by bjodah almost 6 years ago

#102 - Warn if fields given & doserate/density in vars

Pull Request - State: closed - Opened by bjodah almost 6 years ago

#101 - 0.7.x to reaction diffusion g values

Pull Request - State: closed - Opened by bjodah almost 6 years ago

#100 - Assert unitless in from_ReactionSystem when unit_registry is None (#98)

Pull Request - State: closed - Opened by bjodah almost 6 years ago

#99 - 0.7.x return on error

Pull Request - State: closed - Opened by bjodah almost 6 years ago

#98 - Assert unitless in from_ReactionSystem when unit_registry is None

Pull Request - State: closed - Opened by bjodah almost 6 years ago

#97 - Add support for constraints in sundials-3.2.0

Pull Request - State: closed - Opened by bjodah almost 6 years ago

#96 - Use sundials-3.2.0

Pull Request - State: closed - Opened by bjodah almost 6 years ago

#95 - Add test case for ReactionDiffusion.from_ReactionSystem(..., fields=<…

Pull Request - State: closed - Opened by bjodah about 6 years ago

#94 - New CI image

Pull Request - State: closed - Opened by bjodah about 6 years ago

#93 - Update CI image and req.

Pull Request - State: closed - Opened by bjodah about 6 years ago

#92 - Set upper requirements for 0.7.x

Pull Request - State: closed - Opened by bjodah about 6 years ago

#91 - Update changelog

Pull Request - State: closed - Opened by bjodah about 6 years ago

#90 - Update AnyODE (bjodah/anyode#19)

Pull Request - State: closed - Opened by bjodah about 6 years ago

#89 - Anyode 19 & pycvodes-0.11.1

Pull Request - State: closed - Opened by bjodah about 6 years ago

#88 - Update to AnyODE-16

Pull Request - State: closed - Opened by bjodah over 6 years ago

#87 - More animations

Pull Request - State: closed - Opened by bjodah over 6 years ago

#86 - Buffer type

Pull Request - State: closed - Opened by bjodah over 6 years ago

#85 - update ci.sh

Pull Request - State: closed - Opened by bjodah over 6 years ago

#84 - Ew ele

Pull Request - State: closed - Opened by bjodah over 6 years ago

#83 - More testing

Pull Request - State: closed - Opened by bjodah over 6 years ago

#82 - Add failing conservation test for spatially varying D

Pull Request - State: closed - Opened by bjodah over 6 years ago

#81 - Per bin diffusion coeff

Pull Request - State: closed - Opened by bjodah over 6 years ago

#80 - Only use C++11 (relax compiler requirements)

Pull Request - State: closed - Opened by bjodah over 6 years ago

#79 - add .util.anim

Pull Request - State: closed - Opened by bjodah over 6 years ago

#78 - Build against latest pycvodes

Pull Request - State: closed - Opened by bjodah over 6 years ago

#77 - Anyode bump

Pull Request - State: closed - Opened by bjodah over 6 years ago

#76 - Changes to conda recipe, added build script using Docker

Pull Request - State: closed - Opened by bjodah over 6 years ago

#75 - Avoid try/except block in setup.py

Pull Request - State: closed - Opened by bjodah over 6 years ago

#74 - Handle atol dict

Pull Request - State: closed - Opened by bjodah over 6 years ago

#73 - Tentative datastructures for optimized cache use

Pull Request - State: closed - Opened by bjodah over 6 years ago

#72 - Make ODESys more robust

Pull Request - State: closed - Opened by bjodah over 6 years ago

#71 - Added stub for ODESys subclass

Pull Request - State: closed - Opened by bjodah over 6 years ago

#70 - New upstream pycvodes

Pull Request - State: closed - Opened by bjodah over 6 years ago

#69 - Update and test against upcoming pycvodes-0.9.0

Pull Request - State: closed - Opened by bjodah about 7 years ago

#68 - Update to latest version of AnyODE

Pull Request - State: closed - Opened by bjodah about 7 years ago

#67 - Use tagged dockerimage for CI run

Pull Request - State: closed - Opened by bjodah about 7 years ago

#66 - Adapt to upstream ChemPy

Pull Request - State: closed - Opened by bjodah over 7 years ago

#65 - Use latest pip, check setup.py version

Pull Request - State: closed - Opened by bjodah almost 8 years ago

#64 - Log2

Pull Request - State: closed - Opened by bjodah over 8 years ago

#63 - get_with_units -> with_units

Pull Request - State: closed - Opened by bjodah over 8 years ago

#62 - solver -> integrator & dense_output for cvode

Pull Request - State: closed - Opened by bjodah over 8 years ago

#61 - Xfail

Pull Request - State: closed - Opened by bjodah over 8 years ago

#60 - Setup io.open

Pull Request - State: closed - Opened by bjodah over 8 years ago

#59 - Rename k -> params

Issue - State: closed - Opened by bjodah over 8 years ago
Labels: enhancement

#58 - Refactor handling of units

Pull Request - State: closed - Opened by bjodah over 8 years ago

#57 - Implement __reduce__ in Integration and ReactionDiffusion

Issue - State: open - Opened by bjodah over 8 years ago
Labels: enhancement

#56 - Improvements to the documentation

Pull Request - State: closed - Opened by bjodah over 8 years ago

#55 - Updates to documenation and examples

Pull Request - State: closed - Opened by bjodah over 8 years ago

#54 - Use setuptools

Pull Request - State: closed - Opened by bjodah over 8 years ago

#53 - Use setuptools and upload to PyPI

Issue - State: closed - Opened by bjodah over 8 years ago

#52 - Use chempy

Pull Request - State: closed - Opened by bjodah over 8 years ago

#51 - Various updates

Pull Request - State: closed - Opened by bjodah almost 9 years ago

#50 - Rename internal variables

Issue - State: closed - Opened by bjodah about 9 years ago
Labels: enhancement, prio:low

#49 - Rename units to unit_registry. Minor changes throughout.

Pull Request - State: closed - Opened by bjodah about 9 years ago

#48 - Add screening (Debye-Huckel theory)

Issue - State: open - Opened by bjodah about 9 years ago

#46 - Var updates

Pull Request - State: closed - Opened by bjodah about 9 years ago

#45 - Handle units when plotting

Pull Request - State: closed - Opened by bjodah over 9 years ago

#44 - Add an abstraction layer for units

Issue - State: closed - Opened by bjodah over 9 years ago - 1 comment

#43 - Add modulated_rxns/modulation to ReactionDiffusion

Pull Request - State: closed - Opened by bjodah over 9 years ago

#42 - Explicit field production

Pull Request - State: closed - Opened by bjodah over 9 years ago

#41 - Change radiolytic reactions to be a separate contribution

Issue - State: closed - Opened by bjodah over 9 years ago - 1 comment

#40 - Added support for units.

Pull Request - State: closed - Opened by bjodah over 9 years ago

#39 - Add support for exporting SBML

Issue - State: closed - Opened by bjodah over 9 years ago
Labels: enhancement, prio:low

#38 - Documentation improvements

Pull Request - State: closed - Opened by bjodah over 9 years ago

#37 - Add support for per species concentration scaling.

Issue - State: closed - Opened by bjodah over 9 years ago - 1 comment
Labels: enhancement

#36 - Drop dependency on pycompilation and pycodeexport

Issue - State: closed - Opened by bjodah over 9 years ago
Labels: enhancement, prio:low

#35 - To be released 0.3

Pull Request - State: closed - Opened by bjodah over 9 years ago

#34 - Enable dumping of linear system associated with preconditioning.

Pull Request - State: closed - Opened by bjodah over 9 years ago

#32 - const_surf_conc.py fails with nstencil > 3

Issue - State: open - Opened by bjodah over 9 years ago - 2 comments
Labels: enhancement

#31 - Iterative solver

Pull Request - State: closed - Opened by bjodah almost 10 years ago - 1 comment

#30 - v0.2.4

Pull Request - State: closed - Opened by bjodah almost 10 years ago - 1 comment

#29 - Fix CI scripts.

Pull Request - State: closed - Opened by bjodah almost 10 years ago - 1 comment

#28 - New Integration class

Pull Request - State: closed - Opened by bjodah almost 10 years ago - 5 comments

#27 - Interface for sensitivities / uncertainties in chemreac.integrate.Integration

Issue - State: open - Opened by bjodah almost 10 years ago
Labels: enhancement

#26 - Incorrect reflective boundary conditions for diffusion in cylindrical / spherical geometries.

Issue - State: closed - Opened by bjodah almost 10 years ago - 1 comment
Labels: bug

#25 - Handle units via quantities

Issue - State: closed - Opened by bjodah almost 10 years ago - 1 comment
Labels: enhancement

#24 - Add cvodes

Issue - State: closed - Opened by bjodah almost 10 years ago
Labels: enhancement

#22 - Template C++ code and try <long double> with sundials.

Issue - State: open - Opened by bjodah almost 10 years ago
Labels: enhancement, prio:low

#20 - Add save/load of integration results.

Issue - State: closed - Opened by bjodah almost 10 years ago - 1 comment
Labels: enhancement, prio:low

#18 - Add fixed step RK4 for reference.

Issue - State: closed - Opened by bjodah almost 10 years ago - 2 comments
Labels: enhancement

#16 - Investigate logy, logt as class mixin cases.

Issue - State: closed - Opened by bjodah almost 10 years ago
Labels: enhancement

#15 - Refactor C++ class to allow specialization

Issue - State: closed - Opened by bjodah almost 10 years ago
Labels: enhancement

#14 - Add sigmoidal damping in logy mode.

Issue - State: open - Opened by bjodah almost 10 years ago - 1 comment
Labels: enhancement

#13 - Add scaling.

Issue - State: closed - Opened by bjodah almost 10 years ago
Labels: enhancement

#12 - Make json file downloadable in docs for relevant examlpes.

Issue - State: closed - Opened by bjodah almost 10 years ago
Labels: enhancement