Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / charite/jannovar issues and pull requests
#534 - Bump log4j-core from 2.15.0 to 2.16.0
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#534 - Bump log4j-core from 2.15.0 to 2.16.0
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
- 1 comment
Labels: dependencies
#533 - broken links to datasets download
Issue -
State: closed - Opened by myeelaw over 2 years ago
- 2 comments
Labels: bug
#532 - Problem of HGVSc conversion
Issue -
State: closed - Opened by smw1414 almost 3 years ago
- 1 comment
Labels: bug
#531 - RefSeq datasets for mm11
Issue -
State: closed - Opened by myeelaw almost 3 years ago
- 7 comments
Labels: enhancement
#531 - RefSeq datasets for mm11
Issue -
State: closed - Opened by myeelaw almost 3 years ago
- 7 comments
Labels: enhancement
#530 - Report the effect for every genes
Issue -
State: open - Opened by smw1414 about 3 years ago
- 1 comment
Labels: enhancement
#530 - Report the effect for every genes
Issue -
State: open - Opened by smw1414 about 3 years ago
- 1 comment
Labels: enhancement
#529 - HGVS-VCF bug ( de.charite.compbio.jannovar.hgvs.bridge.CannotTranslateHGVSVariant: No transcript )
Issue -
State: closed - Opened by mansi800 about 3 years ago
- 1 comment
Labels: bug
#529 - HGVS-VCF bug ( de.charite.compbio.jannovar.hgvs.bridge.CannotTranslateHGVSVariant: No transcript )
Issue -
State: closed - Opened by mansi800 about 3 years ago
- 1 comment
Labels: bug
#528 - Fix for #519 - add support for HGVS repeats
Pull Request -
State: closed - Opened by markwoon about 3 years ago
- 6 comments
#528 - Fix for #519 - add support for HGVS repeats
Pull Request -
State: closed - Opened by markwoon about 3 years ago
- 6 comments
#525 - Fix projections on GRCh38
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
- 1 comment
Labels: fix
#525 - Fix projections on GRCh38
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
- 1 comment
Labels: fix
#524 - Problems with projection of dbSNP variants and RefSeq for hg38
Issue -
State: closed - Opened by holtgrewe about 3 years ago
- 2 comments
Labels: bug
#523 - Remove support for UCSC transcripts
Issue -
State: open - Opened by holtgrewe about 3 years ago
- 5 comments
Labels: enhancement
#523 - Remove support for UCSC transcripts
Issue -
State: open - Opened by holtgrewe about 3 years ago
- 5 comments
Labels: enhancement
#522 - Adding raw data download & database build scripts
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
- 1 comment
Labels: enhancement
#522 - Adding raw data download & database build scripts
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
- 1 comment
Labels: enhancement
#521 - Use single branch instead of develop/master split.
Issue -
State: open - Opened by holtgrewe about 3 years ago
- 2 comments
Labels: enhancement
#520 - Junit 5 migration
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
- 2 comments
Labels: enhancement
#520 - Junit 5 migration
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
- 2 comments
Labels: enhancement
#519 - Complete support for parsing HGVS nucleotide expressions.
Issue -
State: open - Opened by holtgrewe about 3 years ago
- 5 comments
Labels: enhancement, help wanted
#519 - Complete support for parsing HGVS nucleotide expressions.
Issue -
State: open - Opened by holtgrewe about 3 years ago
- 5 comments
Labels: enhancement, help wanted
#518 - Fixing problem with HGVS delins with del bases but no ins bases (#491).
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#518 - Fixing problem with HGVS delins with del bases but no ins bases (#491).
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#517 - Implementing HGVS unchanged nucleic acid sequence.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#517 - Implementing HGVS unchanged nucleic acid sequence.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#516 - Implement HGVS parsing for protein sequences
Issue -
State: open - Opened by holtgrewe about 3 years ago
Labels: enhancement, help wanted
#516 - Implement HGVS parsing for protein sequences
Issue -
State: open - Opened by holtgrewe about 3 years ago
Labels: enhancement, help wanted
#515 - Adding variant annotation via H2 databases.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#515 - Adding variant annotation via H2 databases.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#514 - Removing support for hg18/GRCh36.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#514 - Removing support for hg18/GRCh36.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#513 - Deposit static files into Zenodo
Issue -
State: closed - Opened by holtgrewe about 3 years ago
- 8 comments
Labels: enhancement
#513 - Deposit static files into Zenodo
Issue -
State: closed - Opened by holtgrewe about 3 years ago
- 8 comments
Labels: enhancement
#512 - Fix for right-shifting deletions on AA sequences.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
- 1 comment
#512 - Fix for right-shifting deletions on AA sequences.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
- 1 comment
#511 - Refurbish vardbs/frequency annotation
Issue -
State: closed - Opened by holtgrewe about 3 years ago
- 1 comment
Labels: enhancement
#511 - Refurbish vardbs/frequency annotation
Issue -
State: closed - Opened by holtgrewe about 3 years ago
- 1 comment
Labels: enhancement
#510 - Migrating to Github Workflows for CI.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#510 - Migrating to Github Workflows for CI.
Pull Request -
State: closed - Opened by holtgrewe about 3 years ago
#509 - Bump commons-io from 2.4 to 2.7 in /jannovar-htsjdk
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies
#509 - Bump commons-io from 2.4 to 2.7 in /jannovar-htsjdk
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies
#508 - Bump commons-io from 2.4 to 2.7 in /jannovar-core
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies
#508 - Bump commons-io from 2.4 to 2.7 in /jannovar-core
Pull Request -
State: closed - Opened by dependabot[bot] about 3 years ago
Labels: dependencies
#507 - beginning junit 5 migration
Pull Request -
State: closed - Opened by pnrobinson over 3 years ago
- 3 comments
#507 - beginning junit 5 migration
Pull Request -
State: closed - Opened by pnrobinson over 3 years ago
- 3 comments
#506 - Contig as replacement for ReferenceDictionary in GenomePosition
Pull Request -
State: closed - Opened by julesjacobsen over 3 years ago
#506 - Contig as replacement for ReferenceDictionary in GenomePosition
Pull Request -
State: closed - Opened by julesjacobsen over 3 years ago
#505 - JUNIT 5
Issue -
State: closed - Opened by pnrobinson over 3 years ago
- 5 comments
#505 - JUNIT 5
Issue -
State: closed - Opened by pnrobinson over 3 years ago
- 5 comments
#504 - Remove INI support for hg18
Issue -
State: closed - Opened by pnrobinson over 3 years ago
#504 - Remove INI support for hg18
Issue -
State: closed - Opened by pnrobinson over 3 years ago
#503 - --show-all option not properly worked
Issue -
State: closed - Opened by smw1414 over 3 years ago
- 2 comments
#503 - --show-all option not properly worked
Issue -
State: closed - Opened by smw1414 over 3 years ago
- 2 comments
#502 - Bump junit from 4.12 to 4.13.1
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#502 - Bump junit from 4.12 to 4.13.1
Pull Request -
State: closed - Opened by dependabot[bot] over 3 years ago
Labels: dependencies
#501 - mitochondrial genetic code
Issue -
State: closed - Opened by smw1414 almost 4 years ago
- 1 comment
Labels: bug
#500 - NCBI urls are out-of-date
Issue -
State: closed - Opened by phwhite-coh almost 4 years ago
- 5 comments
#500 - NCBI urls are out-of-date
Issue -
State: closed - Opened by phwhite-coh almost 4 years ago
- 5 comments
#499 - Fix right-shifting deletions on AA sequence (fixes #498)
Pull Request -
State: closed - Opened by roland-ewald almost 4 years ago
- 5 comments
#498 - Faulty right-shifting of deletions for protein annotations
Issue -
State: closed - Opened by roland-ewald almost 4 years ago
#498 - Faulty right-shifting of deletions for protein annotations
Issue -
State: closed - Opened by roland-ewald almost 4 years ago
#497 - Error with chr_accessions_GRCh38.p12
Issue -
State: closed - Opened by pnrobinson almost 4 years ago
#497 - Error with chr_accessions_GRCh38.p12
Issue -
State: closed - Opened by pnrobinson almost 4 years ago
#496 - Step by step procedure
Issue -
State: closed - Opened by KarthickRajaNarayanan almost 4 years ago
- 4 comments
#496 - Step by step procedure
Issue -
State: closed - Opened by KarthickRajaNarayanan almost 4 years ago
- 4 comments
#495 - Error while trying to download human hg-19 reference using jannovar v 0.34 installed via bioconda
Issue -
State: closed - Opened by guglusharma almost 4 years ago
- 7 comments
Labels: bug
#495 - Error while trying to download human hg-19 reference using jannovar v 0.34 installed via bioconda
Issue -
State: closed - Opened by guglusharma almost 4 years ago
- 7 comments
Labels: bug
#494 - Bump log4j.version from 2.11.2 to 2.13.3
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
Labels: dependencies
#494 - Bump log4j.version from 2.11.2 to 2.13.3
Pull Request -
State: closed - Opened by dependabot[bot] about 4 years ago
Labels: dependencies
#493 - Cannot parse HGVS `NP_000095.2:p.Gly168_His169=`
Issue -
State: closed - Opened by markwoon about 4 years ago
- 3 comments
#493 - Cannot parse HGVS `NP_000095.2:p.Gly168_His169=`
Issue -
State: closed - Opened by markwoon about 4 years ago
- 3 comments
#492 - unable to download Mouse transcript databases
Issue -
State: closed - Opened by myeelaw about 4 years ago
- 1 comment
#492 - unable to download Mouse transcript databases
Issue -
State: closed - Opened by myeelaw about 4 years ago
- 1 comment
#491 - Problem parsing HGVS `delins`
Issue -
State: closed - Opened by markwoon about 4 years ago
- 2 comments
#490 - Cannot parse HGVS repeats
Issue -
State: open - Opened by markwoon about 4 years ago
- 1 comment
Labels: enhancement, help wanted
#490 - Cannot parse HGVS repeats
Issue -
State: open - Opened by markwoon about 4 years ago
- 1 comment
Labels: enhancement, help wanted
#489 - `default_sources.ini` seems not to cover all download links
Issue -
State: closed - Opened by stolpeo about 4 years ago
#489 - `default_sources.ini` seems not to cover all download links
Issue -
State: closed - Opened by stolpeo about 4 years ago
#488 - Fixes for default_sources.ini
Pull Request -
State: closed - Opened by stolpeo about 4 years ago
- 3 comments
#488 - Fixes for default_sources.ini
Pull Request -
State: closed - Opened by stolpeo about 4 years ago
- 3 comments
#487 - Download/processing of hg19/* fails
Issue -
State: closed - Opened by stolpeo about 4 years ago
- 1 comment
#487 - Download/processing of hg19/* fails
Issue -
State: closed - Opened by stolpeo about 4 years ago
- 1 comment
#486 - Building ReferenceDictionary fails for hg19/*
Issue -
State: closed - Opened by stolpeo about 4 years ago
- 16 comments
#486 - Building ReferenceDictionary fails for hg19/*
Issue -
State: closed - Opened by stolpeo about 4 years ago
- 16 comments
#485 - Update hg19 chrToAccessions source
Pull Request -
State: closed - Opened by dcroote about 4 years ago
- 2 comments
#485 - Update hg19 chrToAccessions source
Pull Request -
State: closed - Opened by dcroote about 4 years ago
- 2 comments
#484 - -d hg38/refseq not found
Issue -
State: closed - Opened by pnrobinson over 4 years ago
- 1 comment
#484 - -d hg38/refseq not found
Issue -
State: closed - Opened by pnrobinson over 4 years ago
- 1 comment
#483 - Translation of HGVS into VCF stalls when writing VCF file with some mutations
Issue -
State: closed - Opened by mmcneill123 over 4 years ago
- 4 comments
Labels: bug
#483 - Translation of HGVS into VCF stalls when writing VCF file with some mutations
Issue -
State: closed - Opened by mmcneill123 over 4 years ago
- 4 comments
Labels: bug
#482 - ERROR: [ERROR] Input string for the chromosomal change
Issue -
State: closed - Opened by zillurbmb51 over 4 years ago
- 1 comment
#482 - ERROR: [ERROR] Input string for the chromosomal change
Issue -
State: closed - Opened by zillurbmb51 over 4 years ago
- 1 comment
#481 - HGVS protein annotation error for deletions (may impact other mutation types e.g. ins)
Issue -
State: closed - Opened by wmgmm over 4 years ago
- 1 comment
#481 - HGVS protein annotation error for deletions (may impact other mutation types e.g. ins)
Issue -
State: closed - Opened by wmgmm over 4 years ago
- 1 comment
#480 - Getting java.lang.InternalError while annotation with 1000 Genome Db
Issue -
State: open - Opened by Habush over 4 years ago
#479 - Update Genotype internals to pre-calculate values
Pull Request -
State: closed - Opened by julesjacobsen over 4 years ago
- 1 comment
#479 - Update Genotype internals to pre-calculate values
Pull Request -
State: closed - Opened by julesjacobsen over 4 years ago
- 1 comment