Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / charite/jannovar issues and pull requests
#635 - Bump org.codehaus.mojo:build-helper-maven-plugin from 3.5.0 to 3.6.0
Pull Request -
State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies
#634 - Bump com.google.code.gson:gson from 2.10.1 to 2.11.0
Pull Request -
State: closed - Opened by dependabot[bot] about 1 month ago
Labels: dependencies
#633 - Bump org.apache.commons:commons-csv from 1.10.0 to 1.11.0
Pull Request -
State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies
#632 - Bump org.apache.maven.plugins:maven-shade-plugin from 3.5.2 to 3.5.3
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies
#631 - Bump org.apache.maven.plugins:maven-jar-plugin from 3.4.0 to 3.4.1
Pull Request -
State: closed - Opened by dependabot[bot] 2 months ago
Labels: dependencies
#630 - Bump org.apache.maven.plugins:maven-jar-plugin from 3.3.0 to 3.4.0
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies
#629 - Bump slf4j.version from 2.0.12 to 2.0.13
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies
#628 - Bump commons-io:commons-io from 2.16.0 to 2.16.1
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies
#627 - Bump org.jacoco:jacoco-maven-plugin from 0.8.11 to 0.8.12
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies
#626 - Bump commons-io:commons-io from 2.15.1 to 2.16.0
Pull Request -
State: closed - Opened by dependabot[bot] 3 months ago
Labels: dependencies
#625 - Bump org.apache.maven.plugins:maven-assembly-plugin from 3.7.0 to 3.7.1
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies
#624 - Bump org.apache.maven.plugins:maven-compiler-plugin from 3.12.1 to 3.13.0
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies
#623 - Bump log4j.version from 2.23.0 to 2.23.1
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies
#622 - Bump org.apache.maven.plugins:maven-assembly-plugin from 3.6.0 to 3.7.0
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies
#621 - Bump org.apache.maven.plugins:maven-shade-plugin from 3.5.1 to 3.5.2
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies
#620 - Bump log4j.version from 2.22.1 to 2.23.0
Pull Request -
State: closed - Opened by dependabot[bot] 4 months ago
Labels: dependencies
#619 - Bump slf4j.version from 2.0.11 to 2.0.12
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#618 - Bump junit.jupiter.version from 5.10.1 to 5.10.2
Pull Request -
State: closed - Opened by dependabot[bot] 5 months ago
Labels: dependencies
#616 - Bump slf4j.version from 2.0.10 to 2.0.11
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#615 - Bump org.apache.maven.plugins:maven-jxr-plugin from 3.3.1 to 3.3.2
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#614 - Bump slf4j.version from 2.0.9 to 2.0.10
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#613 - Bump log4j.version from 2.22.0 to 2.22.1
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#612 - Bump org.apache.maven.plugins:maven-compiler-plugin from 3.11.0 to 3.12.1
Pull Request -
State: closed - Opened by dependabot[bot] 6 months ago
Labels: dependencies
#611 - Bump org.apache.maven.plugins:maven-surefire-plugin from 3.2.2 to 3.2.3
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#610 - Bump com.google.code.gson:gson from 2.8.9 to 2.10.1
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#609 - Bump com.github.samtools:htsjdk from 4.0.2 to 4.1.0
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#608 - Bump org.jacoco:jacoco-maven-plugin from 0.8.3 to 0.8.11
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#607 - Bump com.google.guava:guava from 22.0 to 23.0
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#606 - Bump com.sparkjava:spark-core from 2.8.0 to 2.9.4
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#605 - Bump junit.jupiter.version from 5.7.2 to 5.10.1
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#604 - Bump org.codehaus.mojo:build-helper-maven-plugin from 3.0.0 to 3.5.0
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#603 - Bump org.antlr:antlr4-runtime from 4.7 to 4.13.1
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#602 - Bump org.ini4j:ini4j from 0.5.1 to 0.5.4
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#601 - Bump org.antlr:antlr4-maven-plugin from 4.7.2 to 4.13.1
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#600 - Bump commons-io:commons-io from 2.15.0 to 2.15.1
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#599 - Bump org.apache.maven.plugins:maven-javadoc-plugin from 3.6.2 to 3.6.3
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#598 - Bump org.apache.maven.plugins:maven-project-info-reports-plugin from 3.4.5 to 3.5.0
Pull Request -
State: closed - Opened by dependabot[bot] 7 months ago
Labels: dependencies
#597 - Bump log4j.version from 2.21.1 to 2.22.0
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#596 - Bump org.apache.maven.plugins:maven-surefire-plugin from 3.2.1 to 3.2.2
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#595 - Bump org.apache.maven.plugins:maven-javadoc-plugin from 3.6.0 to 3.6.2
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#594 - Bump org.apache.maven.plugins:maven-jxr-plugin from 3.0.0 to 3.3.1
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#593 - Bump commons-io:commons-io from 2.7 to 2.15.0
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#592 - Bump org.apache.maven.plugins:maven-jar-plugin from 2.5 to 3.3.0
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#591 - Bump log4j.version from 2.20.0 to 2.21.1
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#590 - Bump org.apache.maven.plugins:maven-surefire-plugin from 3.1.2 to 3.2.1
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#589 - Bump org.apache.maven.plugins:maven-enforcer-plugin from 1.4.1 to 3.4.1
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#588 - Bump com.github.samtools:htsjdk from 2.20.3 to 4.0.2
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#587 - Bump org.apache.maven.plugins:maven-shade-plugin from 2.2 to 3.5.1
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#586 - Bump com.h2database:h2 from 1.4.200 to 2.2.224
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#585 - Bump org.apache.maven.plugins:maven-dependency-plugin from 2.8 to 3.6.1
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
Labels: dependencies
#584 - Bump org.apache.commons:commons-csv from 1.4 to 1.10.0
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#583 - Bump slf4j.version from 1.7.25 to 2.0.9
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#582 - Bump org.apache.maven.plugins:maven-dependency-plugin from 2.8 to 3.6.0
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
- 1 comment
Labels: dependencies
#581 - Bump org.apache.maven.plugins:maven-surefire-plugin from 2.22.2 to 3.1.2
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#580 - Bump org.apache.maven.plugins:maven-javadoc-plugin from 2.10.4 to 3.6.0
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#579 - Bump commons-net:commons-net from 3.9.0 to 3.10.0
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#578 - Bump org.apache.maven.plugins:maven-resources-plugin from 2.6 to 3.3.1
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#577 - Bump org.apache.maven.plugins:maven-compiler-plugin from 3.3 to 3.11.0
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#576 - Bump net.sourceforge.argparse4j:argparse4j from 0.7.0 to 0.9.0
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#575 - Bump org.apache.maven.plugins:maven-assembly-plugin from 2.4 to 3.6.0
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#574 - Create automerge.yml
Pull Request -
State: closed - Opened by holtgrewe 9 months ago
#573 - Bump commons-net:commons-net from 3.3 to 3.9.0
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#572 - Bump log4j.version from 2.17.1 to 2.20.0
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#571 - Bump org.apache.maven.plugins:maven-project-info-reports-plugin from 2.4 to 3.4.5
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#570 - Bump org.tomdz.maven:sphinx-maven-plugin from 1.0.2 to 1.0.3
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#569 - Bump org.apache.maven.plugins:maven-scm-publish-plugin from 1.1 to 3.2.1
Pull Request -
State: closed - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#568 - Create dependabot.yml
Pull Request -
State: closed - Opened by holtgrewe 9 months ago
#567 - Exception in thread "main" java.lang.NullPointerException
Issue -
State: open - Opened by leemdi 10 months ago
- 1 comment
Labels: bug
#566 - Update ini4j dependency to at least 0.5.4 due to CVE-2022-41404
Issue -
State: open - Opened by thomasredlin about 1 year ago
Labels: bug
#565 - Refactored the methods and individual classes for better reusuability
Pull Request -
State: closed - Opened by Jeet989 about 1 year ago
#564 - Bump commons-net from 3.3 to 3.9.0 in /jannovar-core
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#563 - Bump commons-net from 3.3 to 3.9.0 in /jannovar-htsjdk
Pull Request -
State: closed - Opened by dependabot[bot] over 1 year ago
- 1 comment
Labels: dependencies
#562 - Create POST endpoint for annotating single variants
Pull Request -
State: closed - Opened by janeliutw over 1 year ago
#561 - Rest Server Error: Bad Message 414 reason: URI Too Long
Issue -
State: closed - Opened by janeliutw over 1 year ago
Labels: bug
#560 - UTF-8 output for synonymous mutations in VCF file
Issue -
State: open - Opened by skurscheid over 1 year ago
- 1 comment
Labels: bug
#559 - Fixing problem with annotating Dragen CNV VCF (#558)
Pull Request -
State: closed - Opened by holtgrewe almost 2 years ago
#558 - Dragen CNV output cannot be parsed
Issue -
State: closed - Opened by holtgrewe almost 2 years ago
Labels: bug
#557 - Jannovar does not annotate deletions for stop_gained (only frameshift)
Issue -
State: open - Opened by janeliutw almost 2 years ago
- 2 comments
Labels: bug
#556 - Annotate coding insertions for splicing
Pull Request -
State: closed - Opened by janeliutw almost 2 years ago
- 1 comment
#555 - Allow disabling 3' Shifting in the rest server
Pull Request -
State: closed - Opened by janeliutw almost 2 years ago
- 2 comments
#554 - Insertions are not annotated for splicing
Issue -
State: closed - Opened by dmb107 almost 2 years ago
- 3 comments
Labels: bug
#553 - Fixing --no-3-prime-shifting in annotation commands (#552)
Pull Request -
State: closed - Opened by holtgrewe about 2 years ago
#552 - Meaning of --no-3-prime-shifting is inverted
Issue -
State: closed - Opened by holtgrewe about 2 years ago
Labels: bug
#551 - 3' Shifting
Issue -
State: open - Opened by lshimp about 2 years ago
- 11 comments
#550 - Command download broken
Issue -
State: open - Opened by holtgrewe about 2 years ago
- 1 comment
Labels: bug
#549 - Enhancements to hgvs to vcf conversion resiliency
Issue -
State: open - Opened by h-joshi about 2 years ago
Labels: enhancement
#548 - Code optimization suggestions
Issue -
State: open - Opened by noobyu6 about 2 years ago
Labels: enhancement
#547 - Bump gson from 2.3.1 to 2.8.9 in /jannovar-cli
Pull Request -
State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies
#546 - Support MANE transcripts
Issue -
State: open - Opened by holtgrewe about 2 years ago
Labels: enhancement
#545 - Fix problem with HGVS-to-VCF (#539)
Pull Request -
State: closed - Opened by holtgrewe over 2 years ago
#544 - Fix problem with building ENSEMBL (#540)
Pull Request -
State: closed - Opened by holtgrewe over 2 years ago
#543 - Fixing broken download linkes in README (#533)
Pull Request -
State: closed - Opened by holtgrewe over 2 years ago
#542 - Adding support for mitochondrial genetic code
Pull Request -
State: closed - Opened by holtgrewe over 2 years ago
#541 - Invalid aminoacid change detected due to GTF file phase ignored
Issue -
State: open - Opened by znikasz over 2 years ago
- 2 comments
Labels: bug
#540 - Building hg38/ensembl version 105 results in NPE
Issue -
State: closed - Opened by znikasz over 2 years ago
Labels: bug
#539 - hgvs-to-vcf hanging when encountering incorrect hgvs entries
Issue -
State: closed - Opened by h-joshi over 2 years ago
- 1 comment
Labels: bug
#538 - Bump log4j-core from 2.17.0 to 2.17.1
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#538 - Bump log4j-core from 2.17.0 to 2.17.1
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#535 - Bump log4j-core from 2.15.0 to 2.17.0
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#535 - Bump log4j-core from 2.15.0 to 2.17.0
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies