chapmanb/bcbio.variation issues and pull requests

#35 - problem

Issue - State: open - Opened by karthickji 12 months ago

#34 - bcbio.variation-0.2.6-standalone.jar

Issue - State: open - Opened by kadex-ux about 2 years ago

#33 - Does not recognize "R" format in VCF header

Issue - State: closed - Opened by huguesfontenelle over 6 years ago - 4 comments

#32 - using standalone tool on ICGC data.

Issue - State: closed - Opened by mortunco almost 8 years ago - 1 comment

#31 - variant-ensemble error with normalized freebayes file

Issue - State: closed - Opened by stsmall about 8 years ago - 2 comments

#30 - poor concordance for indels but not SNPs

Issue - State: closed - Opened by stsmall about 8 years ago - 1 comment

#29 - Update bcbio.variation-0.2.6-standalone.jar link in README.md.

Issue - State: closed - Opened by whitejbiii almost 9 years ago - 1 comment

#28 - Error with variant-utils comparetwo: Structural variant type not handled: :NON_REF

Issue - State: open - Opened by ragans about 9 years ago - 2 comments

#27 - support for non human data.

Issue - State: open - Opened by timknut over 9 years ago - 2 comments

#26 - bcbio.variation-0.2.1 standalone errors

Issue - State: open - Opened by ssaif over 9 years ago - 1 comment

#25 - Cannot cast java.lang.Integer to java.lang.CharSequence

Issue - State: closed - Opened by lbeltrame over 9 years ago - 2 comments

#24 - format of input files: java.lang.NumberFormatException: For input string:

Issue - State: open - Opened by zeneofa over 9 years ago - 7 comments

#23 - "variant-ensemble" command failing from within bcbio-nextgen example pipeline run

Issue - State: closed - Opened by nhansen over 9 years ago - 1 comment

#22 - Out of bounds error during normalization: freebayes

Issue - State: open - Opened by stsmall over 9 years ago - 7 comments

#21 - Illegal base [ ] seen in the allele; seemingly random error

Issue - State: closed - Opened by stsmall over 9 years ago - 3 comments

#20 - problem with normalization

Issue - State: closed - Opened by parlar over 9 years ago - 1 comment

#19 - error in normalized somatic calls

Issue - State: closed - Opened by parlar over 9 years ago - 4 comments

#18 - Error at the validation step

Issue - State: open - Opened by ssaif almost 10 years ago - 7 comments

#17 - Handling of multi-sample vcf

Issue - State: closed - Opened by a113n about 10 years ago - 1 comment

#16 - Handling of multiallelic sites

Issue - State: closed - Opened by stsmall about 10 years ago - 3 comments

#15 - Small correction to doc for vcfSimpleStatsWalker

Pull Request - State: closed - Opened by tzhughes about 10 years ago - 1 comment

#14 - could not find the main class bcbio.variation.core

Issue - State: closed - Opened by acquarius1990 over 10 years ago - 2 comments

#13 - getEnd() / END KEY Error

Issue - State: closed - Opened by BioInfo over 10 years ago - 10 comments

#12 - ensemble variant calling using bcbio.variation - java error

Issue - State: closed - Opened by shalabhsuman almost 11 years ago - 5 comments

#11 - bcbio.variation using Lein

Issue - State: closed - Opened by shalabhsuman almost 11 years ago - 5 comments

#10 - bcbio variation files

Issue - State: closed - Opened by davidhoover almost 11 years ago - 3 comments

#9 - Add Google Analytics

Pull Request - State: closed - Opened by cjfields almost 12 years ago - 1 comment

#8 - core.match compile issue

Issue - State: closed - Opened by lynaghk almost 12 years ago

#7 - File duplicates returned by API