chanzuckerberg/galago issues and pull requests

#217 - Add tooltips to pack layout

Pull Request - State: closed - Opened by sidneymbell 17 days ago

#216 - Add debranding to main build

Pull Request - State: closed - Opened by sidneymbell 17 days ago

#215 - Pack layout (#30)

Pull Request - State: closed - Opened by sidneymbell about 1 year ago

#214 - Add failsafe for invalid dates

Pull Request - State: closed - Opened by sidneymbell almost 2 years ago

#213 - Add accordion style summaries

Pull Request - State: closed - Opened by sidneymbell about 2 years ago

#212 - Interoperability fixes

Pull Request - State: closed - Opened by sidneymbell about 2 years ago

#211 - Make SNP distance matrix (i.e., heatmap data) downloadable as TSV

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [part] heatmap

#210 - I am a fake issue

Issue - State: closed - Opened by sidneymbell about 2 years ago
Labels: Blocker for launch

#209 - Wire up mrca URL query param to state

Issue - State: open - Opened by sidneymbell about 2 years ago

#208 - Magic button for selecting clade

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [part] cluster selection & validation

#207 - Report accordions

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [part] report text / copy

#206 - Adjust epi curve, geo subclades and sampling bias to show as much as we can with partial geo data

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [type] scientific consideration, [part] epi curve, [part] report text / copy, [part] sampling table

#205 - Fix overlapping UI elements & sample name inputs

Pull Request - State: closed - Opened by sidneymbell about 2 years ago

#204 - [Bug?] Galago doesn't like UShER JSON (yet)

Issue - State: open - Opened by AngieHinrichs about 2 years ago - 11 comments
Labels: [type] bug

#203 - Beta launch!

Pull Request - State: closed - Opened by sidneymbell about 2 years ago

#202 - Sampling bias table fix

Pull Request - State: closed - Opened by sidneymbell about 2 years ago

#201 - Do a pass through the report text to make sure it still "works" when they haven't selected any samples of interest

Issue - State: closed - Opened by sidneymbell about 2 years ago
Labels: [type] scientific consideration

#200 - Update prod ahead of conference presentation on Thurs

Pull Request - State: closed - Opened by sidneymbell about 2 years ago

#199 - [Bug] Visual issues around fetch error message and long fetch URLs

Issue - State: closed - Opened by vincent-czi about 2 years ago - 1 comment
Labels: [type] bug, [theme] general display

#198 - Make "Analyze your data in Galago" dialog title bolder/larger

Issue - State: open - Opened by Janeece about 2 years ago

#197 - Display loaded file name next to "Select Tree JSON" button

Issue - State: closed - Opened by Janeece about 2 years ago - 1 comment

#196 - Add Tree Name or File Name to the "Analyze Data" dialog

Issue - State: closed - Opened by Janeece about 2 years ago - 1 comment

#195 - Add a way for users to cancel/close "Analyze Your Data" dialog

Issue - State: open - Opened by Janeece about 2 years ago

#194 - Consider enabling clade selection by clicking on an internal node in the tree / network diagram

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [type] ideas for future extensions, [part] tree / network, [part] cluster selection & validation

#193 - Add in the "daylight" algorithm for unrooted tree layouts

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [part] tree / network

#192 - Clean up residual wonkiness in tree layout

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [part] tree / network

#191 - Make the clade selector controls visible on both the scatterplot and tree view

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [part] tree / network

#190 - Add tickmarks to branches every N mutations

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [part] tree / network

#189 - [perf] Move pairwise distance to run for the whole tree once on load, not when a mrca is selected

Issue - State: closed - Opened by sidneymbell about 2 years ago
Labels: [theme] eng excellence

#188 - [Bug] in samples of interest dialog, deleting text still thinks there's one sample of interest?

Issue - State: closed - Opened by sidneymbell about 2 years ago
Labels: [type] bug, [part] cluster selection & validation

#187 - Add error warning for `fetch` failures

Issue - State: closed - Opened by sidneymbell about 2 years ago
Labels: Blocker for launch

#186 - URL-based API for JSON also takes query params (eg, location)

Issue - State: closed - Opened by vincent-czi about 2 years ago
Labels: [type] Launch detritus

#185 - Make location and division optional

Issue - State: closed - Opened by sidneymbell about 2 years ago
Labels: [part] epi curve, [part] report text / copy, [part] sampling table, [part] landing page

#184 - Clade def redesign f/u

Pull Request - State: closed - Opened by sidneymbell about 2 years ago

#183 - Detect malformed tree JSON, do something about it

Issue - State: closed - Opened by vincent-czi about 2 years ago
Labels: Blocker for launch, [type] Launch detritus

#182 - Add country input

Issue - State: closed - Opened by sidneymbell about 2 years ago
Labels: [part] landing page

#181 - Rewrite sampling bias insight for other pathogens

Issue - State: open - Opened by sidneymbell about 2 years ago
Labels: [type] scientific consideration, [part] report text / copy

#180 - BUG: sampling bias table zeroes out for some clades

Issue - State: closed - Opened by sidneymbell about 2 years ago
Labels: [part] report text / copy, Blocker for launch

#179 - Fix logo src

Pull Request - State: closed - Opened by sidneymbell about 2 years ago

#178 - CI/CD -- Basic status check as part of PR, require pass to merge

Issue - State: open - Opened by vincent-czi over 2 years ago
Labels: [theme] eng excellence, [type] Launch detritus

#177 - Handle changes around custom domain

Pull Request - State: closed - Opened by vincent-czi over 2 years ago - 1 comment

#176 - Bring in CI/CD build deploy pipeline

Pull Request - State: closed - Opened by vincent-czi over 2 years ago

#175 - Calculate pathogen-specific parameters (includes new landing page + upload modal)

Pull Request - State: closed - Opened by sidneymbell over 2 years ago - 1 comment

#174 - [Bug] Favicon not displaying on deployed GitHub Pages

Issue - State: open - Opened by vincent-czi over 2 years ago
Labels: [type] bug, [type] Launch detritus

#173 - Improve README around deploy, Staging, Prod

Issue - State: closed - Opened by vincent-czi over 2 years ago
Labels: [type] Launch detritus

#172 - Move domain to `galago.czgenepi.org`

Issue - State: closed - Opened by sidneymbell over 2 years ago - 1 comment
Labels: Blocker for launch

#171 - Keep the data state consistent throughout the app at all times by disabling "preview" functionality

Pull Request - State: closed - Opened by sidneymbell over 2 years ago

#170 - Move filters to mini drawer; fix sidenotes -> tooltips

Pull Request - State: closed - Opened by sidneymbell over 2 years ago

#169 - Don't fall over if missing internal dates; replace clade selectors with slider + drop down.

Pull Request - State: closed - Opened by sidneymbell over 2 years ago

#168 - [Merge only when Stable Beta Launch milestone lands] Make the banner simpler, smaller and dismissible

Pull Request - State: closed - Opened by sidneymbell over 2 years ago

#167 - Triple check sample names and distances in heatmap

Issue - State: closed - Opened by sidneymbell over 2 years ago
Labels: [type] scientific consideration, [part] heatmap, Blocker for launch

#166 - Add prettier as a CLI so we can use it to validate PRs

Issue - State: closed - Opened by sidneymbell over 2 years ago - 1 comment
Labels: [theme] eng excellence

#165 - Pop a tiny spinner next to the cluster selection module while computing clusters with Introduction Weight Heuristic

Issue - State: open - Opened by sidneymbell over 2 years ago - 1 comment
Labels: [part] cluster selection & validation, design input requested

#164 - [Bug] Case definition filter updates samples of interest but doesn't show in the box above

Issue - State: closed - Opened by sidneymbell over 2 years ago - 1 comment
Labels: [type] bug, [part] cluster selection & validation, Blocker for launch

#163 - [Bug] Typing in sample names explodes after putting in a non-valid sample name and corresponding comma

Issue - State: closed - Opened by sidneymbell over 2 years ago
Labels: [type] bug, Blocker for launch

#162 - Allow user to add epi metadata from the main app screen

Issue - State: open - Opened by sidneymbell over 2 years ago
Labels: [theme] general display

#161 - Allow users to select different location of interest (`home_geo`) within the app interface

Issue - State: open - Opened by sidneymbell over 2 years ago
Labels: [type] ideas for future extensions, [theme] general display

#160 - Heatmap! :)

Pull Request - State: closed - Opened by sidneymbell over 2 years ago

#159 - Move filters drawer to the left; open by default.

Issue - State: closed - Opened by sidneymbell over 2 years ago - 2 comments
Labels: [theme] general display, [source] design review

#158 - Change left header to a title

Issue - State: closed - Opened by sidneymbell over 2 years ago
Labels: [source] design review

#157 - [Bug] `state` gets confused when user (1) loads demo (2) back button (3) uploads data

Issue - State: open - Opened by sidneymbell over 2 years ago - 5 comments
Labels: [type] bug, Blocker for launch

#156 - Make the relationship between samples of interest & case definitions clearer

Issue - State: closed - Opened by sidneymbell over 2 years ago - 2 comments
Labels: [part] cluster selection & validation, Blocker for launch, [source] design review, design input requested

#155 - Improve copy in clustering section

Issue - State: closed - Opened by sidneymbell over 2 years ago
Labels: [type] scientific consideration, [part] cluster selection & validation, [source] design review

#154 - Use animation or other indicator to make it more obvious that the report is being regenerated as they click through clades

Issue - State: closed - Opened by sidneymbell over 2 years ago - 1 comment
Labels: [theme] general display, [source] design review

#153 - Add more organization to the report

Issue - State: open - Opened by sidneymbell over 2 years ago
Labels: [theme] general display, [part] report text / copy, [source] design review

#152 - Once MUI has a component available for file picker buttons, use them

Issue - State: open - Opened by sidneymbell over 2 years ago
Labels: [theme] general display, [source] design review

#151 - [Suggestion] Make sample coloring mirror mrca hover state coloring to better connect the two plots

Issue - State: closed - Opened by sidneymbell over 2 years ago
Labels: [part] scatterplot, [source] design review

#150 - [Bug] Toggle button doesn't show activated state

Issue - State: closed - Opened by sidneymbell over 2 years ago - 1 comment
Labels: [type] bug, [theme] general display, [source] design review

#149 - Make blank state report text smaller

Issue - State: closed - Opened by sidneymbell over 2 years ago
Labels: [theme] general display, [source] design review

#148 - Add tooltip callout to point users to where to start

Issue - State: open - Opened by sidneymbell over 2 years ago
Labels: [source] design review

#147 - Move demo & upload blurbs to side-by-side on landing page.

Issue - State: closed - Opened by sidneymbell over 2 years ago - 3 comments
Labels: [source] design review, design input requested, [part] landing page

#146 - Make headers bigger and update copy in upload modal

Issue - State: closed - Opened by sidneymbell over 2 years ago
Labels: [source] design review, [part] landing page

#145 - Move upload flow to modal

Issue - State: closed - Opened by sidneymbell over 2 years ago
Labels: Blocker for launch, [source] design review, [part] landing page

#144 - Make the banner smaller

Issue - State: open - Opened by sidneymbell over 2 years ago
Labels: [source] design review

#143 - Add labels to tree

Issue - State: closed - Opened by sidneymbell over 2 years ago - 1 comment
Labels: Blocker for launch

#142 - [Bug] If no tree data, return to upload / landing page

Issue - State: closed - Opened by sidneymbell over 2 years ago - 1 comment
Labels: [type] bug, [theme] general display, Blocker for launch

#141 - Infer whether branch lengths are given in number of mutations (whole numbers) or subs/site (decimals) and convert to N mutations if necessary

Issue - State: open - Opened by sidneymbell over 2 years ago
Labels: [type] scientific consideration

GitHub / chanzuckerberg/galago issues and pull requests