Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / chanzuckerberg/czid-workflows issues and pull requests
#100 - Refactor AMR wdl
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#100 - Refactor AMR wdl
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#99 - fix broken blast link
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#99 - fix broken blast link
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#98 - [BugFix] replace missing function call raise error
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#98 - [BugFix] replace missing function call raise error
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#97 - Revert fetching accessions dynamically from S3
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#97 - Revert fetching accessions dynamically from S3
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#96 - Scaffold for long read mngs alignment
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#96 - Scaffold for long read mngs alignment
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#95 - Add recommendation to error
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#95 - Add recommendation to error
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#94 - Add Run Glue Job
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
- 2 comments
#94 - Add Run Glue Job
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
- 2 comments
#93 - Use Marisa Trie in short-read-mngs
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
- 1 comment
#93 - Use Marisa Trie in short-read-mngs
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
- 1 comment
#92 - AMR create docker and initial run
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#92 - AMR create docker and initial run
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#91 - Use marisa-trie in short-read-mngs
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#91 - Use marisa-trie in short-read-mngs
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#90 - Switch to marisa trie for phylo tree
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#90 - Switch to marisa trie for phylo tree
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#89 - Pass through index-version to run_sfn and harvest it as a metric
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#89 - Pass through index-version to run_sfn and harvest it as a metric
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#88 - Use marisa trie in CG
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#88 - Use marisa trie in CG
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#87 - Index Generation Marisa Trie
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#87 - Index Generation Marisa Trie
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#86 - Fix betacornavirus database in taxoniq
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#86 - Fix betacornavirus database in taxoniq
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#85 - Force columns of m8 file to int
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#85 - Force columns of m8 file to int
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#84 - Uncomment drop taxon_lineages_old
Issue -
State: closed - Opened by rzlim08 over 2 years ago
#84 - Uncomment drop taxon_lineages_old
Issue -
State: closed - Opened by rzlim08 over 2 years ago
#83 - Append closing paren to generate coverage stats instead of write
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#83 - Append closing paren to generate coverage stats instead of write
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#82 - fix cg validate input test
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#82 - fix cg validate input test
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#81 - Use taxoniq own db
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#81 - Use taxoniq own db
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#80 - Version files cg
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#80 - Version files cg
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#79 - add version files for each step
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#79 - add version files for each step
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#78 - Bump numpy from 1.21.0 to 1.22.0 in /phylotree-ng
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#78 - Bump numpy from 1.21.0 to 1.22.0 in /phylotree-ng
Pull Request -
State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies
#77 - add longest 5 reads for nr
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#77 - add longest 5 reads for nr
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#76 - [SC-196119] Read alignment fix
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#76 - [SC-196119] Read alignment fix
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#75 - Add space in error message
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#75 - Add space in error message
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#74 - Remove gdbm
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#74 - Remove gdbm
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#73 - downgrade ubuntu version for short-read-mngs compat
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#73 - downgrade ubuntu version for short-read-mngs compat
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#72 - don't replace db for shelve
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#72 - don't replace db for shelve
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#71 - Index generation load patch
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#71 - Index generation load patch
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#70 - host_filter.wdl modernization
Pull Request -
State: closed - Opened by mlin over 2 years ago
- 11 comments
#70 - host_filter.wdl modernization
Pull Request -
State: closed - Opened by mlin over 2 years ago
- 11 comments
#69 - Add raise error to docker
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#69 - Add raise error to docker
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#68 - update phylotree taxoniq wheels
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
- 1 comment
#68 - update phylotree taxoniq wheels
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
- 1 comment
#67 - Taxoniq update wheels
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#67 - Taxoniq update wheels
Pull Request -
State: closed - Opened by rzlim08 over 2 years ago
#66 - Add logging and fix bug with alignment job statuses
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#66 - Add logging and fix bug with alignment job statuses
Pull Request -
State: closed - Opened by morsecodist over 2 years ago
#65 - Revert czid-dedup error
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#65 - Revert czid-dedup error
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#64 - Fall back to batch API for status checks
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
#64 - Fall back to batch API for status checks
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
#63 - Index turbo
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
- 1 comment
#63 - Index turbo
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
- 1 comment
#62 - Add filenames to error messages for CG
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#62 - Add filenames to error messages for CG
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#61 - Add proper filenames to error messages
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#61 - Add proper filenames to error messages
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#60 - Reverting automatically updating changelog
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#60 - Reverting automatically updating changelog
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#59 - Revert insert release notes into changelog
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#59 - Revert insert release notes into changelog
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#58 - Automatically add release tag and notes
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#58 - Automatically add release tag and notes
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#57 - Add scatter gather parallelism to minimap2 chunks
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
- 1 comment
#57 - Add scatter gather parallelism to minimap2 chunks
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
- 1 comment
#56 - Split GenerateIndexAccessions into substeps for more performance
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
#56 - Split GenerateIndexAccessions into substeps for more performance
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
#55 - Change error copy
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#55 - Change error copy
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#54 - ignore warnings for diamond
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
#54 - ignore warnings for diamond
Pull Request -
State: closed - Opened by morsecodist almost 3 years ago
#53 - Upgrade boto
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
- 1 comment
#53 - Upgrade boto
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
- 1 comment
#52 - Remove mode from Config
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#52 - Remove mode from Config
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
#51 - Coverage viz fix
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
- 1 comment
#51 - Coverage viz fix
Pull Request -
State: closed - Opened by rzlim08 almost 3 years ago
- 1 comment