Ecosyste.ms: Issues

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GitHub / chainsawriot/rang issues and pull requests

#153 - Fix #150 fix #149 fix#152 (#151)

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#152 - resolve is not deterministic

Issue - State: closed - Opened by chainsawriot over 1 year ago - 2 comments

#151 - Fix #150 fix #149

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#150 - `.gh` doesn't respect envvars `GITHUB_PAT` etc.

Issue - State: closed - Opened by chainsawriot over 1 year ago - 2 comments

#149 - UnRipley the package

Issue - State: open - Opened by chainsawriot over 1 year ago - 2 comments

#148 - Add slides for R/Basel

Pull Request - State: closed - Opened by chainsawriot over 1 year ago

#147 - allow empty `pkgs` for `resolve`

Issue - State: open - Opened by chainsawriot over 1 year ago

#146 - reconstruction based on sessionInfo output

Issue - State: open - Opened by aghaynes over 1 year ago

#145 - Fix #144

Pull Request - State: closed - Opened by chainsawriot over 1 year ago

#144 - Can't determine installation order.

Issue - State: closed - Opened by Howquez over 1 year ago - 3 comments

#143 - Fix #141

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#142 - Add PLOS One version of the paper

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#141 - Upstream `remotes::system_requirements` issues

Issue - State: closed - Opened by chainsawriot over 1 year ago

#140 - Rocker EOL fixing

Issue - State: open - Opened by chainsawriot over 1 year ago

#139 - language editing

Pull Request - State: closed - Opened by schochastics over 1 year ago

#138 - Add `.normalize_docker_steps` ref #133

Pull Request - State: closed - Opened by chainsawriot over 1 year ago

#137 - Refactor the two *ize() functions into one

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#136 - Refresh `cache` ref #131

Pull Request - State: open - Opened by chainsawriot over 1 year ago - 2 comments

#135 - Add #133

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#134 - Adding Apptainer/Singularity support

Pull Request - State: closed - Opened by e-kotov over 1 year ago - 9 comments

#133 - A collection of post-installation steps

Issue - State: open - Opened by chainsawriot over 1 year ago - 3 comments

#132 - Add `Makefile` Improvements

Issue - State: open - Opened by chainsawriot over 1 year ago - 1 comment

#131 - Rerunning of `update.R` should clear out the cache?

Issue - State: open - Opened by chainsawriot over 1 year ago

#130 - Don't use the default CRAN mirror in `update.R`

Issue - State: closed - Opened by chainsawriot over 1 year ago

#129 - Turing

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 2 comments

#128 - add .run_line_wrap helper function to wrap long CMD lines in dockerfiles

Pull Request - State: closed - Opened by e-kotov over 1 year ago - 4 comments

#127 - Add a usable version of `use_rang` for Rocker

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#126 - Env

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#125 - Using ENV in the Dockerfile

Issue - State: closed - Opened by chainsawriot over 1 year ago

#124 - Moresteps

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#123 - #119 is incorrect

Issue - State: closed - Opened by chainsawriot over 1 year ago
Labels: bug

#122 - `dockerize()`: allow for additional steps

Issue - State: closed - Opened by chainsawriot over 1 year ago
Labels: v0.3

#121 - Add implementation of `as_pkgrefs("DESCRIPTION")` #113

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 2 comments

#120 - added as_pkgrefs DESCRIPTION (#113)

Pull Request - State: closed - Opened by schochastics over 1 year ago - 3 comments

#119 - Refactor dockerfile generation code #117

Pull Request - State: closed - Opened by chainsawriot over 1 year ago

#118 - Hardcode the Debian image URLs

Issue - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#117 - The Dockerfile generation part is kind of ugly

Issue - State: closed - Opened by chainsawriot over 1 year ago

#116 - Update caching structure

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#115 - `cache` directory: caching R source and Debian image

Issue - State: closed - Opened by chainsawriot over 1 year ago
Labels: v0.3

#114 - Migrate away from Docker Hub

Issue - State: open - Opened by chainsawriot over 1 year ago - 5 comments

#113 - `as_pkgrefs("DESCRIPTION")` and `export_description(rang)`

Issue - State: open - Opened by chainsawriot over 1 year ago - 3 comments
Labels: v0.3

#112 - Possible FAQ items

Issue - State: open - Opened by chainsawriot over 1 year ago

#111 - Paper issues

Issue - State: closed - Opened by chainsawriot over 1 year ago - 1 comment

#110 - Executable compenium template

Issue - State: open - Opened by chainsawriot over 1 year ago - 7 comments
Labels: v0.3

#109 - Paper

Pull Request - State: closed - Opened by chainsawriot over 1 year ago

#108 - fixed some typos and grammar

Pull Request - State: closed - Opened by schochastics over 1 year ago

#107 - R131

Pull Request - State: closed - Opened by chainsawriot over 1 year ago - 3 comments

#106 - added uncheckable bioc sysreqs

Pull Request - State: closed - Opened by schochastics over 1 year ago - 3 comments

#105 - System Requirements query reform

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 3 comments

#104 - Export renv (#55)

Pull Request - State: closed - Opened by schochastics almost 2 years ago - 8 comments

#103 - Fix #102

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#102 - local pkgs with one slash interpreted as github

Issue - State: closed - Opened by schochastics almost 2 years ago - 6 comments

#101 - Failed package caching should `stop`, not just `warning`

Issue - State: closed - Opened by chainsawriot almost 2 years ago

#100 - Make compiling raw packages with `--no-build-vignettes` #99

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 2 comments

#99 - Failed dockerization due to missing `VignetteBuilder`

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 4 comments
Labels: bug

#98 - Implement `local::` in `resolve()`

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#97 - set snapshot date depending on pkgs (#53,#55)

Pull Request - State: closed - Opened by schochastics almost 2 years ago - 6 comments

#96 - package guesstimating wit renv::dependencies (#53, #55)

Pull Request - State: closed - Opened by schochastics almost 2 years ago - 2 comments

#95 - reduce dependencies (#94)

Pull Request - State: closed - Opened by schochastics almost 2 years ago - 6 comments

#94 - Elimination of some dependencies?

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 2 comments

#93 - Add tests for as_pkgrefs.sessionInfo for bioc

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#92 - Adoption and refinement of singleline query of System Requirements

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 11 comments
Labels: v0.2

#91 - Make .query_sysreqs_bioc testable

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 2 comments

#90 - Fix #89

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#89 - bioc url generation scheme is not always like that

Issue - State: closed - Opened by chainsawriot almost 2 years ago

#88 - Fix #85

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#87 - Fix81

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago

#86 - Fix #82

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#85 - Can't assume all CRAN packages does not import bioc packages

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 10 comments

#84 - Fix the incorrect querying of bioc terminal nodes

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#83 - Fix the incorrect querying of bioc terminal nodes

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 2 comments

#82 - Bioc's Terminal nodes can't be correctly queried and silently passed

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment
Labels: bug

#81 - `.generate_installation_order` can be in an infinite loop

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 2 comments
Labels: bug

#80 - add support for renv lockfiles (#55)

Pull Request - State: closed - Opened by schochastics almost 2 years ago - 6 comments

#79 - Stop the patch codecov check

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#78 - Fix67

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#77 - Fix #75

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago

#76 - convert empty rang object to edgelist (#75)

Pull Request - State: closed - Opened by schochastics almost 2 years ago - 1 comment

#75 - Empty `rang` behaviors

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment
Labels: test

#74 - expose convert_edgelist (#56)

Pull Request - State: closed - Opened by schochastics almost 2 years ago - 8 comments

#73 - removed the simple json parser

Pull Request - State: closed - Opened by schochastics almost 2 years ago - 1 comment

#72 - glue and cli available

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 4 comments

#71 - Fix #69

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#70 - Fix #68

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#69 - Incorrect `.normalize_pkg` due to incomplete bioc data

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 3 comments
Labels: bug

#68 - Running `resolve()` for bioc packages from major release versions always fails

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 5 comments
Labels: bug

#67 - Provide an option to not use Rocker for `dockerize()`

Issue - State: closed - Opened by chainsawriot almost 2 years ago

#66 - Fix #63

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago

#65 - Fix #36

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago

#64 - Improve robustness of `.query_sysreqs_bioc`

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#61 - Decoupling `rang.R` from `compile_r.sh` for R < 3.1

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 2 comments

#60 - as_pkgrefs #55

Pull Request - State: closed - Opened by chainsawriot almost 2 years ago - 1 comment

#59 - add support for Bioconductor #58

Pull Request - State: closed - Opened by schochastics almost 2 years ago - 16 comments

#58 - Support `bioc::`

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 18 comments
Labels: test

#57 - Support `local::`

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 3 comments
Labels: v0.2

#56 - Expose `convert_edgelist`

Issue - State: closed - Opened by chainsawriot almost 2 years ago
Labels: v0.2

#55 - interoperability with R and `renv`

Issue - State: closed - Opened by chainsawriot almost 2 years ago - 30 comments
Labels: v0.2

#54 - minor typo and grammar fixes

Pull Request - State: closed - Opened by schochastics almost 2 years ago