cerebis/meta-sweeper issues and pull requests

#29 - Sampling from a pool of real genomes

Issue - State: open - Opened by cerebis over 8 years ago
Labels: enhancement, possible, low priority

#29 - Sampling from a pool of real genomes

Issue - State: open - Opened by cerebis over 8 years ago
Labels: enhancement, possible, low priority

#28 - More than one ancestral genome

Issue - State: closed - Opened by cerebis over 8 years ago - 2 comments
Labels: enhancement

#28 - More than one ancestral genome

Issue - State: closed - Opened by cerebis over 8 years ago - 2 comments
Labels: enhancement

#27 - alignmentToTruth.py requires refactoring.

Issue - State: closed - Opened by cerebis over 8 years ago
Labels: bug

#27 - alignmentToTruth.py requires refactoring.

Issue - State: closed - Opened by cerebis over 8 years ago
Labels: bug

#26 - Conversion of YAML output to JSON

Issue - State: closed - Opened by cerebis over 8 years ago - 1 comment

#26 - Conversion of YAML output to JSON

Issue - State: closed - Opened by cerebis over 8 years ago - 1 comment

#25 - nextflow fork might be better using traits

Issue - State: closed - Opened by cerebis over 8 years ago - 1 comment

#25 - nextflow fork might be better using traits

Issue - State: closed - Opened by cerebis over 8 years ago - 1 comment

#24 - Sweep parameters must be exposed in aggregation

Issue - State: closed - Opened by cerebis over 8 years ago - 1 comment

#24 - Sweep parameters must be exposed in aggregation

Issue - State: closed - Opened by cerebis over 8 years ago - 1 comment

#23 - implement NMI measure

Issue - State: open - Opened by cerebis over 8 years ago - 3 comments
Labels: enhancement, low priority

#23 - implement NMI measure

Issue - State: open - Opened by cerebis over 8 years ago - 3 comments
Labels: enhancement, low priority

#22 - Updates required on readme

Issue - State: closed - Opened by cerebis over 8 years ago - 2 comments

#22 - Updates required on readme

Issue - State: closed - Opened by cerebis over 8 years ago - 2 comments

#21 - Revert order of config includes

Issue - State: closed - Opened by cerebis over 8 years ago

#21 - Revert order of config includes

Issue - State: closed - Opened by cerebis over 8 years ago

#20 - Consideration of code resuse outside of meta-sweeper.

Issue - State: closed - Opened by cerebis over 8 years ago
Labels: enhancement, low priority

#20 - Consideration of code resuse outside of meta-sweeper.

Issue - State: closed - Opened by cerebis over 8 years ago
Labels: enhancement, low priority

#19 - Rename and tidy bamToEdges_mod2.py

Issue - State: closed - Opened by cerebis over 8 years ago - 1 comment

#19 - Rename and tidy bamToEdges_mod2.py

Issue - State: closed - Opened by cerebis over 8 years ago - 1 comment

#18 - Finding dependent binaries

Issue - State: closed - Opened by cerebis over 8 years ago - 2 comments

#18 - Finding dependent binaries

Issue - State: closed - Opened by cerebis over 8 years ago - 2 comments

#17 - lofreq appears to be missing.

Issue - State: closed - Opened by cerebis over 8 years ago - 2 comments

#17 - lofreq appears to be missing.

Issue - State: closed - Opened by cerebis over 8 years ago - 2 comments

#16 - resume fails due to FileAlreadyExistsException

Issue - State: closed - Opened by koadman over 8 years ago - 5 comments
Labels: wontfix

#16 - resume fails due to FileAlreadyExistsException

Issue - State: closed - Opened by koadman over 8 years ago - 5 comments
Labels: wontfix

#15 - readme.md requires update

Issue - State: closed - Opened by cerebis over 8 years ago

#15 - readme.md requires update

Issue - State: closed - Opened by cerebis over 8 years ago

#14 - Print usage when run with no arguments

Issue - State: closed - Opened by koadman almost 9 years ago - 2 comments
Labels: enhancement, low priority

#14 - Print usage when run with no arguments

Issue - State: closed - Opened by koadman almost 9 years ago - 2 comments
Labels: enhancement, low priority

#13 - Move supporting groovy code out of work-flow file

Issue - State: closed - Opened by cerebis almost 9 years ago - 1 comment

#13 - Move supporting groovy code out of work-flow file

Issue - State: closed - Opened by cerebis almost 9 years ago - 1 comment

#12 - Add further graphical representations besides the basic contig graph.

Issue - State: open - Opened by cerebis almost 9 years ago
Labels: enhancement

#12 - Add further graphical representations besides the basic contig graph.

Issue - State: open - Opened by cerebis almost 9 years ago
Labels: enhancement

#11 - Eliminate dependency on Bedtools

Issue - State: closed - Opened by cerebis almost 9 years ago - 3 comments
Labels: enhancement, wontfix

#11 - Eliminate dependency on Bedtools

Issue - State: closed - Opened by cerebis almost 9 years ago - 3 comments
Labels: enhancement, wontfix

#10 - Workflows: add conditional HiC and 3C support

Issue - State: closed - Opened by cerebis almost 9 years ago - 1 comment
Labels: enhancement, high priority

#9 - Nextflow breaks on PBSPro because of script names.

Issue - State: closed - Opened by cerebis almost 9 years ago - 4 comments

#8 - Nextflow fails on Altair's PBSPro

Issue - State: closed - Opened by cerebis almost 9 years ago - 3 comments

#7 - Reconsider TruthTable serialized format

Issue - State: closed - Opened by cerebis almost 9 years ago - 1 comment

#6 - Enhancing 3C simulation (simForward.py)

Issue - State: closed - Opened by cerebis almost 9 years ago - 4 comments
Labels: enhancement, high priority

#5 - Potential memory bottleneck with assembly

Issue - State: closed - Opened by cerebis almost 9 years ago - 1 comment
Labels: question

#4 - a5_pipeline.pl dies on symbolically linked gzipped FastQ

Issue - State: closed - Opened by cerebis almost 9 years ago

#3 - pipeline should include random 3C read pairs by default

Issue - State: closed - Opened by koadman almost 9 years ago - 1 comment
Labels: duplicate

#2 - Fastq and BAMs should be gzipped

Issue - State: closed - Opened by cerebis almost 9 years ago - 2 comments

#1 - HiC reads not reproduced run to run despite seed.

Issue - State: closed - Opened by cerebis almost 9 years ago

GitHub / cerebis/meta-sweeper issues and pull requests