Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / ceabiodb/biodb issues and pull requests
#585 - Add Travis-CI
Pull Request -
State: open - Opened by pkrog over 1 year ago
#584 - Put back travis CI
Issue -
State: open - Opened by pkrog over 1 year ago
#583 - Remove R_front script
Issue -
State: closed - Opened by pkrog almost 2 years ago
- 1 comment
Labels: testing
#582 - BiocCheck findings should be addressed
Issue -
State: open - Opened by vjcitn over 2 years ago
- 4 comments
#581 - Helper function for multiple BiodbUrl instantiations
Issue -
State: open - Opened by pkrog over 2 years ago
#580 - Debug uniprot request on windows
Pull Request -
State: closed - Opened by pkrog almost 3 years ago
Labels: bug
#579 - Refact tests of ref entries
Pull Request -
State: closed - Opened by pkrog almost 3 years ago
Labels: testing
#578 - Review bioccheck notes
Pull Request -
State: closed - Opened by pkrog almost 3 years ago
#577 - Improve isSearchableField() overwriting
Issue -
State: open - Opened by pkrog almost 3 years ago
Labels: refactoring
#576 - Use more hidden abtract methods
Pull Request -
State: closed - Opened by pkrog almost 3 years ago
#575 - Define dynamically the methods enabled by flags in BiodbConn
Issue -
State: open - Opened by pkrog about 3 years ago
Labels: refactoring
#574 - Switch to r6
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#573 - R6 classes doc update
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: documentation, refactoring
#572 - Replace overwriting of methods by do... methods
Issue -
State: open - Opened by pkrog about 3 years ago
- 1 comment
Labels: documentation, refactoring
#571 - Use R6 clone() in BiodbEntry
Issue -
State: open - Opened by pkrog about 3 years ago
#570 - Remove biodb child object class
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#569 - Integrate BiodbMassdbConn into BiodbConn.
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#568 - Integrate BiodbCompounddb into BiodbConn.
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#567 - Merge interfaces into biodbconn
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#566 - Bioc cache
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: cache
#565 - Remove dynamic setting of default value of svn.binary.path config key
Issue -
State: open - Opened by pkrog about 3 years ago
#564 - Remove dynamic default value of useragent config key
Issue -
State: open - Opened by pkrog about 3 years ago
#563 - Improve r front
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#562 - Helpers functions for connector instantiation
Issue -
State: open - Opened by pkrog about 3 years ago
Labels: enhancement
#561 - Correct test of return type of searchForEntries().
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: bug, testing
#560 - Correct test.searchCompound().
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: bug, testing
#559 - Debug longtests
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: testing
#558 - Move tests/long folder to longtests. Enable long tests for Bioc.
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: testing
#557 - Remove .Rhistory when cleaning.
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: wizard
#556 - Skip some searchable fields in generic tests
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: testing
#555 - Avoid reccurent update of test reference entries
Issue -
State: open - Opened by pkrog about 3 years ago
- 1 comment
Labels: testing
#554 - Improve error messages of test.searchForEntries()
Issue -
State: open - Opened by pkrog about 3 years ago
Labels: testing
#553 - Bug fix: correct generic test of searchForEntries.
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: bug
#552 - Improve test msg.
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: testing
#551 - Use Bioconductor longtests
Issue -
State: closed - Opened by pkrog about 3 years ago
Labels: testing
#550 - Bugfix return type of search for entries
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: bug
#549 - Create r.yml
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: testing
#548 - Changed example.
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: documentation
#547 - Use r beta
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: testing
#546 - Create connectors for MongoDB
Issue -
State: open - Opened by pkrog about 3 years ago
- 1 comment
Labels: New database connector
#545 - Use MongoDB as a cache system replacement
Issue -
State: closed - Opened by pkrog about 3 years ago
- 1 comment
Labels: cache
#544 - Remove class `BiodbEditable`
Issue -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#543 - Remove class `BiodbWritable`
Issue -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#542 - Remove class `BiodbRemotedbConn`
Issue -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#541 - Remove class `BiodbDownload`
Issue -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#540 - Remove multiple inheritance in CompSqliteConn and MassSqliteConn
Issue -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#539 - Remove multiple inheritance in CompCsvFileConn and MassCsvFileConn
Issue -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#538 - Reformat code for BiocCheck.
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#537 - Bioconductor submission corrections
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#536 - Vignettes review
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#535 - Improve show() method of BiodbEntryFields()
Issue -
State: open - Opened by pkrog about 3 years ago
#534 - Implement show() method for BiodbRequestScheduler
Issue -
State: open - Opened by pkrog about 3 years ago
#533 - List created connectors in BiodbFactory::show()
Issue -
State: open - Opened by pkrog about 3 years ago
#532 - Rename vignette "intro" in template
Issue -
State: open - Opened by pkrog about 3 years ago
Labels: wizard
#531 - Implement copyEntries()
Issue -
State: open - Opened by pkrog about 3 years ago
- 1 comment
Labels: enhancement
#530 - Create a class for definning a filter for searchForEntries()
Issue -
State: open - Opened by pkrog about 3 years ago
Labels: enhancement
#529 - Extract global methods from BiodbMain
Issue -
State: open - Opened by pkrog about 3 years ago
Labels: refactoring
#528 - Long tests in ext pkg
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#527 - Use utils::URLencode and URLdecode.
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#526 - Missing testthat file for running cpp tests
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#525 - Correct travis template
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#524 - Rd warning file overwritten by alias biodb
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#522 - Speed up tests
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#521 - Bioc check issues
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#520 - Check issues
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#519 - Add bioc check git clone
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: testing
#518 - Upgrade to r6
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#517 - Use lgr pkg
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: refactoring
#516 - Error when computing field with missing connector
Issue -
State: open - Opened by pkrog about 3 years ago
Labels: bug, engine
#515 - Upgrade chebi ex conn
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#514 - Add target `upgrade` inside template Makefile
Issue -
State: closed - Opened by pkrog about 3 years ago
Labels: wizard
#513 - Add flags to disable features in extension YAML config
Issue -
State: open - Opened by pkrog about 3 years ago
Labels: wizard
#512 - Use chk pkg
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#511 - Remove caution messages
Pull Request -
State: closed - Opened by pkrog about 3 years ago
#510 - Use .Deprecated()
Issue -
State: closed - Opened by pkrog about 3 years ago
- 1 comment
#509 - Ext corrections
Pull Request -
State: closed - Opened by pkrog about 3 years ago
Labels: wizard
#506 - Use logger package
Issue -
State: closed - Opened by pkrog over 3 years ago
- 3 comments
Labels: refactoring
#504 - Replace custom asserts with chk package
Issue -
State: closed - Opened by pkrog over 3 years ago
Labels: refactoring
#502 - Switch from RefClass to R6
Issue -
State: closed - Opened by pkrog over 3 years ago
- 3 comments
Labels: refactoring
#484 - Correct/update vignette new_connector
Issue -
State: closed - Opened by pkrog over 3 years ago
#483 - Switch to a logging package?
Issue -
State: closed - Opened by pkrog over 3 years ago
- 1 comment
#469 - Write new_connector_pkg vignette
Issue -
State: closed - Opened by pkrog over 3 years ago
Labels: documentation
#468 - Review details vignette
Issue -
State: closed - Opened by pkrog over 3 years ago
Labels: documentation
#466 - Review entries vignette
Issue -
State: closed - Opened by pkrog over 3 years ago
Labels: documentation
#465 - Review in_house_mass_db vignette
Issue -
State: closed - Opened by pkrog over 3 years ago
Labels: documentation
#464 - Review new_connector vignette
Issue -
State: closed - Opened by pkrog over 3 years ago
Labels: documentation
#451 - Explain R5 in new_connector vignette
Issue -
State: closed - Opened by pkrog over 3 years ago
Labels: documentation
#429 - Vignette: how to delete cache files
Issue -
State: closed - Opened by pkrog over 4 years ago
Labels: documentation
#428 - How to implement compound database connector
Issue -
State: closed - Opened by pkrog over 4 years ago
Labels: documentation
#416 - Look at BiocFileCache
Issue -
State: closed - Opened by pkrog almost 5 years ago
- 1 comment
Labels: refactoring, cache
#392 - Submit to Bioconductor
Issue -
State: closed - Opened by pkrog almost 5 years ago
- 3 comments
#369 - Add level setting for warnings, and hide warnings if level is set to 0.
Issue -
State: closed - Opened by pkrog about 5 years ago
- 1 comment
Labels: engine, discarded
#332 - Remove use of shortterm and longterm in persistent cache
Issue -
State: closed - Opened by pkrog about 5 years ago
- 1 comment
Labels: engine
#331 - How to handle cache files storage for testing ?
Issue -
State: closed - Opened by pkrog about 5 years ago
- 1 comment
Labels: engine
#330 - Handle upgrade of persistent cache system by using version number
Issue -
State: closed - Opened by pkrog about 5 years ago
- 1 comment
Labels: engine
#329 - Use a separate cache subfolder for each database.
Issue -
State: closed - Opened by pkrog about 5 years ago
- 2 comments
Labels: engine
#327 - Move cache folder to separate repos
Issue -
State: closed - Opened by pkrog about 5 years ago
- 2 comments
Labels: testing
#280 - Remove mode `quick.online`
Issue -
State: closed - Opened by pkrog over 5 years ago
- 2 comments
Labels: testing
#189 - Implement InfoReporter class
Issue -
State: closed - Opened by pkrog over 6 years ago
- 1 comment
Labels: engine, discarded
#67 - Use haskey in cache system
Issue -
State: closed - Opened by pkrog almost 7 years ago
- 1 comment
Labels: enhancement, engine