Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / ceabiodb/biodb issues and pull requests

#585 - Add Travis-CI

Pull Request - State: open - Opened by pkrog over 1 year ago

#584 - Put back travis CI

Issue - State: open - Opened by pkrog over 1 year ago

#583 - Remove R_front script

Issue - State: closed - Opened by pkrog almost 2 years ago - 1 comment
Labels: testing

#582 - BiocCheck findings should be addressed

Issue - State: open - Opened by vjcitn over 2 years ago - 4 comments

#581 - Helper function for multiple BiodbUrl instantiations

Issue - State: open - Opened by pkrog over 2 years ago

#580 - Debug uniprot request on windows

Pull Request - State: closed - Opened by pkrog almost 3 years ago
Labels: bug

#579 - Refact tests of ref entries

Pull Request - State: closed - Opened by pkrog almost 3 years ago
Labels: testing

#578 - Review bioccheck notes

Pull Request - State: closed - Opened by pkrog almost 3 years ago

#577 - Improve isSearchableField() overwriting

Issue - State: open - Opened by pkrog almost 3 years ago
Labels: refactoring

#576 - Use more hidden abtract methods

Pull Request - State: closed - Opened by pkrog almost 3 years ago

#575 - Define dynamically the methods enabled by flags in BiodbConn

Issue - State: open - Opened by pkrog about 3 years ago
Labels: refactoring

#574 - Switch to r6

Pull Request - State: closed - Opened by pkrog about 3 years ago

#573 - R6 classes doc update

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: documentation, refactoring

#572 - Replace overwriting of methods by do... methods

Issue - State: open - Opened by pkrog about 3 years ago - 1 comment
Labels: documentation, refactoring

#571 - Use R6 clone() in BiodbEntry

Issue - State: open - Opened by pkrog about 3 years ago

#570 - Remove biodb child object class

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#569 - Integrate BiodbMassdbConn into BiodbConn.

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#568 - Integrate BiodbCompounddb into BiodbConn.

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#567 - Merge interfaces into biodbconn

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#566 - Bioc cache

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: cache

#564 - Remove dynamic default value of useragent config key

Issue - State: open - Opened by pkrog about 3 years ago

#563 - Improve r front

Pull Request - State: closed - Opened by pkrog about 3 years ago

#562 - Helpers functions for connector instantiation

Issue - State: open - Opened by pkrog about 3 years ago
Labels: enhancement

#561 - Correct test of return type of searchForEntries().

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: bug, testing

#560 - Correct test.searchCompound().

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: bug, testing

#559 - Debug longtests

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: testing

#558 - Move tests/long folder to longtests. Enable long tests for Bioc.

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: testing

#557 - Remove .Rhistory when cleaning.

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: wizard

#556 - Skip some searchable fields in generic tests

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: testing

#555 - Avoid reccurent update of test reference entries

Issue - State: open - Opened by pkrog about 3 years ago - 1 comment
Labels: testing

#554 - Improve error messages of test.searchForEntries()

Issue - State: open - Opened by pkrog about 3 years ago
Labels: testing

#553 - Bug fix: correct generic test of searchForEntries.

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: bug

#552 - Improve test msg.

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: testing

#551 - Use Bioconductor longtests

Issue - State: closed - Opened by pkrog about 3 years ago
Labels: testing

#550 - Bugfix return type of search for entries

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: bug

#549 - Create r.yml

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: testing

#548 - Changed example.

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: documentation

#547 - Use r beta

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: testing

#546 - Create connectors for MongoDB

Issue - State: open - Opened by pkrog about 3 years ago - 1 comment
Labels: New database connector

#545 - Use MongoDB as a cache system replacement

Issue - State: closed - Opened by pkrog about 3 years ago - 1 comment
Labels: cache

#544 - Remove class `BiodbEditable`

Issue - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#543 - Remove class `BiodbWritable`

Issue - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#542 - Remove class `BiodbRemotedbConn`

Issue - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#541 - Remove class `BiodbDownload`

Issue - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#540 - Remove multiple inheritance in CompSqliteConn and MassSqliteConn

Issue - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#539 - Remove multiple inheritance in CompCsvFileConn and MassCsvFileConn

Issue - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#538 - Reformat code for BiocCheck.

Pull Request - State: closed - Opened by pkrog about 3 years ago

#537 - Bioconductor submission corrections

Pull Request - State: closed - Opened by pkrog about 3 years ago

#536 - Vignettes review

Pull Request - State: closed - Opened by pkrog about 3 years ago

#535 - Improve show() method of BiodbEntryFields()

Issue - State: open - Opened by pkrog about 3 years ago

#534 - Implement show() method for BiodbRequestScheduler

Issue - State: open - Opened by pkrog about 3 years ago

#533 - List created connectors in BiodbFactory::show()

Issue - State: open - Opened by pkrog about 3 years ago

#532 - Rename vignette "intro" in template

Issue - State: open - Opened by pkrog about 3 years ago
Labels: wizard

#531 - Implement copyEntries()

Issue - State: open - Opened by pkrog about 3 years ago - 1 comment
Labels: enhancement

#530 - Create a class for definning a filter for searchForEntries()

Issue - State: open - Opened by pkrog about 3 years ago
Labels: enhancement

#529 - Extract global methods from BiodbMain

Issue - State: open - Opened by pkrog about 3 years ago
Labels: refactoring

#528 - Long tests in ext pkg

Pull Request - State: closed - Opened by pkrog about 3 years ago

#527 - Use utils::URLencode and URLdecode.

Pull Request - State: closed - Opened by pkrog about 3 years ago

#526 - Missing testthat file for running cpp tests

Pull Request - State: closed - Opened by pkrog about 3 years ago

#525 - Correct travis template

Pull Request - State: closed - Opened by pkrog about 3 years ago

#524 - Rd warning file overwritten by alias biodb

Pull Request - State: closed - Opened by pkrog about 3 years ago

#522 - Speed up tests

Pull Request - State: closed - Opened by pkrog about 3 years ago

#521 - Bioc check issues

Pull Request - State: closed - Opened by pkrog about 3 years ago

#520 - Check issues

Pull Request - State: closed - Opened by pkrog about 3 years ago

#519 - Add bioc check git clone

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: testing

#518 - Upgrade to r6

Pull Request - State: closed - Opened by pkrog about 3 years ago

#517 - Use lgr pkg

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: refactoring

#516 - Error when computing field with missing connector

Issue - State: open - Opened by pkrog about 3 years ago
Labels: bug, engine

#515 - Upgrade chebi ex conn

Pull Request - State: closed - Opened by pkrog about 3 years ago

#514 - Add target `upgrade` inside template Makefile

Issue - State: closed - Opened by pkrog about 3 years ago
Labels: wizard

#513 - Add flags to disable features in extension YAML config

Issue - State: open - Opened by pkrog about 3 years ago
Labels: wizard

#512 - Use chk pkg

Pull Request - State: closed - Opened by pkrog about 3 years ago

#511 - Remove caution messages

Pull Request - State: closed - Opened by pkrog about 3 years ago

#510 - Use .Deprecated()

Issue - State: closed - Opened by pkrog about 3 years ago - 1 comment

#509 - Ext corrections

Pull Request - State: closed - Opened by pkrog about 3 years ago
Labels: wizard

#506 - Use logger package

Issue - State: closed - Opened by pkrog over 3 years ago - 3 comments
Labels: refactoring

#504 - Replace custom asserts with chk package

Issue - State: closed - Opened by pkrog over 3 years ago
Labels: refactoring

#502 - Switch from RefClass to R6

Issue - State: closed - Opened by pkrog over 3 years ago - 3 comments
Labels: refactoring

#484 - Correct/update vignette new_connector

Issue - State: closed - Opened by pkrog over 3 years ago

#483 - Switch to a logging package?

Issue - State: closed - Opened by pkrog over 3 years ago - 1 comment

#469 - Write new_connector_pkg vignette

Issue - State: closed - Opened by pkrog over 3 years ago
Labels: documentation

#468 - Review details vignette

Issue - State: closed - Opened by pkrog over 3 years ago
Labels: documentation

#466 - Review entries vignette

Issue - State: closed - Opened by pkrog over 3 years ago
Labels: documentation

#465 - Review in_house_mass_db vignette

Issue - State: closed - Opened by pkrog over 3 years ago
Labels: documentation

#464 - Review new_connector vignette

Issue - State: closed - Opened by pkrog over 3 years ago
Labels: documentation

#451 - Explain R5 in new_connector vignette

Issue - State: closed - Opened by pkrog over 3 years ago
Labels: documentation

#429 - Vignette: how to delete cache files

Issue - State: closed - Opened by pkrog over 4 years ago
Labels: documentation

#428 - How to implement compound database connector

Issue - State: closed - Opened by pkrog over 4 years ago
Labels: documentation

#416 - Look at BiocFileCache

Issue - State: closed - Opened by pkrog almost 5 years ago - 1 comment
Labels: refactoring, cache

#392 - Submit to Bioconductor

Issue - State: closed - Opened by pkrog almost 5 years ago - 3 comments

#369 - Add level setting for warnings, and hide warnings if level is set to 0.

Issue - State: closed - Opened by pkrog about 5 years ago - 1 comment
Labels: engine, discarded

#332 - Remove use of shortterm and longterm in persistent cache

Issue - State: closed - Opened by pkrog about 5 years ago - 1 comment
Labels: engine

#331 - How to handle cache files storage for testing ?

Issue - State: closed - Opened by pkrog about 5 years ago - 1 comment
Labels: engine

#330 - Handle upgrade of persistent cache system by using version number

Issue - State: closed - Opened by pkrog about 5 years ago - 1 comment
Labels: engine

#329 - Use a separate cache subfolder for each database.

Issue - State: closed - Opened by pkrog about 5 years ago - 2 comments
Labels: engine

#327 - Move cache folder to separate repos

Issue - State: closed - Opened by pkrog about 5 years ago - 2 comments
Labels: testing

#280 - Remove mode `quick.online`

Issue - State: closed - Opened by pkrog over 5 years ago - 2 comments
Labels: testing

#189 - Implement InfoReporter class

Issue - State: closed - Opened by pkrog over 6 years ago - 1 comment
Labels: engine, discarded

#67 - Use haskey in cache system

Issue - State: closed - Opened by pkrog almost 7 years ago - 1 comment
Labels: enhancement, engine