Ecosyste.ms: Issues

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GitHub / cdcgov/wastewater-informed-covid-forecasting issues and pull requests

#54 - Use stan AR(1) in fake data simulation

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement

#52 - roxygenize in pre-commit

Issue - State: open - Opened by kaitejohnson 5 months ago

#52 - roxygenize in pre-commit

Issue - State: open - Opened by kaitejohnson 5 months ago

#51 - Mechanistic handling of observation error in ww scaling with contributing infections

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement, help wanted

#51 - Mechanistic handling of observation error in ww scaling with contributing infections

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement, help wanted

#50 - Start AR(1) on first differences at stationarity

Issue - State: open - Opened by kaitejohnson 5 months ago

#50 - Start AR(1) on first differences at stationarity

Issue - State: open - Opened by kaitejohnson 5 months ago

#48 - Identify functions in wweval that should have examples and don't currently

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: refactor

#48 - Identify functions in wweval that should have examples and don't currently

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: refactor

#47 - Unit tests for `wweval` plot functions

Issue - State: open - Opened by kaitejohnson 5 months ago

#47 - Unit tests for `wweval` plot functions

Issue - State: open - Opened by kaitejohnson 5 months ago

#46 - Speed up container build time

Issue - State: open - Opened by kaitejohnson 5 months ago - 3 comments
Labels: azure batch

#46 - Speed up container build time

Issue - State: open - Opened by kaitejohnson 5 months ago - 3 comments
Labels: azure batch

#45 - Add progress messaging to CLI script

Issue - State: open - Opened by kaitejohnson 5 months ago

#45 - Add progress messaging to CLI script

Issue - State: open - Opened by kaitejohnson 5 months ago

#44 - Build and push latest image in CI

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: azure batch

#44 - Build and push latest image in CI

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: azure batch

#43 - Use `poetry` to setup python environments

Issue - State: open - Opened by kaitejohnson 5 months ago

#43 - Use `poetry` to setup python environments

Issue - State: open - Opened by kaitejohnson 5 months ago

#42 - Add functionality to handle sludge/solids

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement

#42 - Add functionality to handle sludge/solids

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement

#41 - Make a change-log

Issue - State: open - Opened by kaitejohnson 5 months ago - 1 comment
Labels: documentation

#41 - Make a change-log

Issue - State: open - Opened by kaitejohnson 5 months ago - 1 comment
Labels: documentation

#40 - Add R(t) (state and site level) to `toy_data_vignette.Rmd`

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement

#40 - Add R(t) (state and site level) to `toy_data_vignette.Rmd`

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement

#39 - Save calibration figure with eval in pipeline + save all post processing figures

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: evaluation, azure batch

#39 - Save calibration figure with eval in pipeline + save all post processing figures

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: evaluation, azure batch

#38 - `Makefile` should handle container deps appropriately

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: azure batch

#38 - `Makefile` should handle container deps appropriately

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: azure batch

#37 - Production pipeline should use the pre-processing code written for eval

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: refactor

#37 - Production pipeline should use the pre-processing code written for eval

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: refactor

#36 - EDA on problem with convergence in states with a large number of sites

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: bug, evaluation

#36 - EDA on problem with convergence in states with a large number of sites

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: bug, evaluation

#35 - Setup pipeline for wastewater metadata vs forecasting performance analysis

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: evaluation

#35 - Setup pipeline for wastewater metadata vs forecasting performance analysis

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: evaluation

#34 - Get rid of nested for loops in creating the hub submission files

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement, evaluation

#34 - Get rid of nested for loops in creating the hub submission files

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement, evaluation

#33 - Fix dependence on config in blob storage

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: azure batch

#33 - Fix dependence on config in blob storage

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: azure batch

#32 - Epidemic phase analysis in head-to-head comparison pipeline

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: evaluation

#32 - Epidemic phase analysis in head-to-head comparison pipeline

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: evaluation

#31 - Rename post-processing code for clarity

Issue - State: open - Opened by kaitejohnson 5 months ago

#31 - Rename post-processing code for clarity

Issue - State: open - Opened by kaitejohnson 5 months ago

#29 - Should weekly rw use calendar weeks or have a specifiable start day of the week?

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement, discussion

#29 - Should weekly rw use calendar weeks or have a specifiable start day of the week?

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: enhancement, discussion

#28 - Only retrieve admissions data once during fitting script

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: medium priority, refactor

#28 - Only retrieve admissions data once during fitting script

Issue - State: open - Opened by kaitejohnson 5 months ago
Labels: medium priority, refactor

#26 - update from June codebase

Pull Request - State: closed - Opened by kaitejohnson 6 months ago

#26 - update from June codebase

Pull Request - State: closed - Opened by kaitejohnson 6 months ago

#25 - V1.14 2024 06 04 update

Pull Request - State: closed - Opened by kaitejohnson 6 months ago

#25 - V1.14 2024 06 04 update

Pull Request - State: closed - Opened by kaitejohnson 6 months ago

#24 - Issue 23: Suppress some Stan output

Pull Request - State: closed - Opened by athowes 6 months ago - 4 comments

#24 - Issue 23: Suppress some Stan output

Pull Request - State: closed - Opened by athowes 6 months ago - 4 comments

#23 - Large amount of Stan output in vignette

Issue - State: closed - Opened by athowes 6 months ago

#23 - Large amount of Stan output in vignette

Issue - State: closed - Opened by athowes 6 months ago

#21 - 5 10 weekly updates

Pull Request - State: closed - Opened by kaitejohnson 6 months ago

#21 - 5 10 weekly updates

Pull Request - State: closed - Opened by kaitejohnson 6 months ago

#20 - V1.13 2024 04 29 run

Pull Request - State: closed - Opened by kaitejohnson 7 months ago

#20 - V1.13 2024 04 29 run

Pull Request - State: closed - Opened by kaitejohnson 7 months ago

#19 - V1.12 2024 04 22 run

Pull Request - State: closed - Opened by kaitejohnson 7 months ago

#19 - V1.12 2024 04 22 run

Pull Request - State: closed - Opened by kaitejohnson 7 months ago

#18 - V1.11 2024 04 15 run

Pull Request - State: closed - Opened by kaitejohnson 7 months ago

#18 - V1.11 2024 04 15 run

Pull Request - State: closed - Opened by kaitejohnson 7 months ago

#17 - V1.10 2024 04 08 run

Pull Request - State: closed - Opened by kaitejohnson 7 months ago

#17 - V1.10 2024 04 08 run

Pull Request - State: closed - Opened by kaitejohnson 7 months ago

#16 - Fix vignette

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#16 - Fix vignette

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#15 - V1.9 2024 04 01 run

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#14 - updates to documentation and IHR process

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#13 - Improve documentation for params object?

Issue - State: closed - Opened by akeyel 8 months ago - 1 comment

#12 - add 2024-03-25 forecasts

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#11 - 2024 03 25 forecasts

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#10 - Update model defn

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#9 - V1.8 2204 03 25 run

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#8 - V1.7 2024 03 18 run

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#7 - fix rendering error

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#6 - V1.6 2024 03 11 run

Pull Request - State: closed - Opened by kaitejohnson 8 months ago

#5 - V1.5 2024 03 04 run

Pull Request - State: closed - Opened by kaitejohnson 9 months ago

#4 - Add forecast outputs

Pull Request - State: closed - Opened by kaitejohnson 9 months ago

#3 - codebase used to generate 2024-02-19 forecasts

Pull Request - State: closed - Opened by kaitejohnson 9 months ago - 1 comment

#2 - add metadata for 2024-02-12 run

Pull Request - State: closed - Opened by kaitejohnson 9 months ago

#1 - V1.2 2024 02 12 run

Pull Request - State: closed - Opened by kaitejohnson 9 months ago