cdcgov/seqsender issues and pull requests

#104 - V1.2.7

Pull Request - State: closed - Opened by dthoward96 about 1 month ago

#103 - v1.2.6 update docs

Pull Request - State: closed - Opened by dthoward96 about 2 months ago

#102 - v1.2.6 update

Pull Request - State: closed - Opened by dthoward96 about 2 months ago

#101 - V1.2.6 Update

Pull Request - State: closed - Opened by dthoward96 about 2 months ago

#100 - Update docs

Pull Request - State: closed - Opened by dthoward96 2 months ago

#99 - V1.2.5 Update

Pull Request - State: closed - Opened by dthoward96 2 months ago

#98 - update dev to latest

Pull Request - State: closed - Opened by dthoward96 2 months ago

#97 - Support for additional special characters in the password field

Issue - State: closed - Opened by vitu1 2 months ago - 1 comment

#96 - V1.2.4

Pull Request - State: closed - Opened by dthoward96 3 months ago

#95 - Fix Genbank Upload Log Bug (#93)

Pull Request - State: closed - Opened by dthoward96 3 months ago

#94 - Check on why GenBank record page does not always show links to Biosample/Bioproject/(SRA?).

Issue - State: open - Opened by nbx0 3 months ago

#93 - V1.2.4 Update

Pull Request - State: closed - Opened by dthoward96 3 months ago

#92 - [FEATURE REQUEST] Add ID-style structure comments to GenBank

Issue - State: open - Opened by nbx0 4 months ago
Labels: enhancement

#91 - [FEATURE REQUEST] Add NCBI databases TSA and WGS

Issue - State: open - Opened by dthoward96 4 months ago
Labels: enhancement

#90 - Dockerfile update

Pull Request - State: closed - Opened by dthoward96 4 months ago

#89 - Documentation and Docker updates

Pull Request - State: closed - Opened by dthoward96 4 months ago

#88 - [FEATURE REQUEST] Adding Pathoplexus to the options

Issue - State: open - Opened by peterwc-cdc 4 months ago
Labels: enhancement

#87 - update pages

Pull Request - State: closed - Opened by dthoward96 4 months ago

#86 - Dev

Pull Request - State: closed - Opened by dthoward96 4 months ago

#85 - V1.2.3 Update

Pull Request - State: closed - Opened by dthoward96 4 months ago

#84 - GitHub action test (#83)

Pull Request - State: closed - Opened by dthoward96 4 months ago

#83 - GitHub action test

Pull Request - State: closed - Opened by dthoward96 4 months ago

#82 - V1.2.2 Update

Pull Request - State: closed - Opened by dthoward96 4 months ago

#81 - update dev

Pull Request - State: closed - Opened by dthoward96 4 months ago

#80 - Add support for new GISAID EpiFlu fields

Issue - State: closed - Opened by nbx0 4 months ago - 1 comment
Labels: bug

#79 - Update issue templates

Pull Request - State: closed - Opened by dthoward96 5 months ago

#78 - V1.2.1 documentation fixes

Pull Request - State: closed - Opened by dthoward96 5 months ago

#77 - v1.2.1 documentation typos fixes

Pull Request - State: closed - Opened by dthoward96 5 months ago

#76 - Merge pull request #72 from CDCgov/dev

Pull Request - State: closed - Opened by dthoward96 5 months ago

#74 - Add docs to readme and doc site about container location and availability

Issue - State: closed - Opened by leebrian 5 months ago - 1 comment
Labels: documentation, enhancement

#73 - Update gh pages

Pull Request - State: closed - Opened by dthoward96 5 months ago

#72 - Dev Update Readme

Pull Request - State: closed - Opened by dthoward96 5 months ago

#71 - Update dev to v1.2.1

Pull Request - State: closed - Opened by dthoward96 5 months ago

#70 - Dthoward96 remove cli

Pull Request - State: closed - Opened by dthoward96 5 months ago

#69 - V1.2.1. Release

Pull Request - State: closed - Opened by dthoward96 5 months ago

#68 - Update issue templates (#66)

Pull Request - State: closed - Opened by dthoward96 5 months ago

#67 - V1.2.1 Update

Issue - State: closed - Opened by dthoward96 5 months ago

#66 - Update issue templates

Pull Request - State: closed - Opened by dthoward96 5 months ago

#65 - Shiny app template errors

Issue - State: closed - Opened by erikwolfsohn 6 months ago - 1 comment

#64 - GISAID covCLI bugfixes & BioSample/SRA modifications

Pull Request - State: closed - Opened by erikwolfsohn 6 months ago - 1 comment

#63 - Update README.md

Pull Request - State: closed - Opened by dthoward96 6 months ago

#62 - Update README.md (#61)

Pull Request - State: closed - Opened by dthoward96 6 months ago

#61 - Update README.md

Pull Request - State: closed - Opened by dthoward96 6 months ago

#60 - V1.2.0 Prod Update

Pull Request - State: closed - Opened by dthoward96 6 months ago

#59 - Update Dev to v1.2.0

Pull Request - State: closed - Opened by dthoward96 6 months ago

#58 - V1.2.0 Update

Pull Request - State: closed - Opened by dthoward96 6 months ago

#57 - Table2asn bug fixes

Pull Request - State: closed - Opened by dthoward96 9 months ago

#56 - Bug fix create.py

Pull Request - State: closed - Opened by dthoward96 9 months ago

#55 - bug fix fasta file creation

Pull Request - State: closed - Opened by dthoward96 10 months ago

#54 - Bug fix for gisaid name overwriting genbank name for fasta file (#53)

Pull Request - State: closed - Opened by dthoward96 10 months ago

#53 - Bug fix for gisaid name overwriting genbank name for fasta file

Pull Request - State: closed - Opened by dthoward96 10 months ago

#53 - Bug fix for gisaid name overwriting genbank name for fasta file

Pull Request - State: closed - Opened by dthoward96 10 months ago

#52 - Add bug fixes from master to v1.2.0

Pull Request - State: closed - Opened by dthoward96 10 months ago - 1 comment

#51 - Bug fix process.py

Pull Request - State: closed - Opened by dthoward96 10 months ago

#50 - create.py duplicate strain name bug

Pull Request - State: closed - Opened by dthoward96 10 months ago

#49 - add either or for strain/isolate

Pull Request - State: closed - Opened by dthoward96 10 months ago

#48 - can't check status

Issue - State: closed - Opened by SeanSierra-Patev 10 months ago - 1 comment

#47 - There is no submission directory at /home/user1/FLU_reporting

Issue - State: closed - Opened by SeanSierra-Patev 11 months ago - 1 comment

#46 - User defined date specificity

Issue - State: closed - Opened by mikeyweigand 11 months ago - 2 comments

#45 - Dthoward96 bugfix

Pull Request - State: closed - Opened by dthoward96 11 months ago

#44 - Create dockerhub_upload.yml

Pull Request - State: closed - Opened by dthoward96 11 months ago - 1 comment

#43 - automatic biosample package validation

Issue - State: closed - Opened by dthoward96 11 months ago

#42 - Dthoward96 org id patch

Pull Request - State: closed - Opened by dthoward96 11 months ago

#41 - Create docker_test_build.yml

Pull Request - State: closed - Opened by dthoward96 11 months ago

#40 - xml submissions to NCBI do not require 'org_id'

Issue - State: closed - Opened by mikeyweigand 11 months ago - 1 comment

#39 - Update process.py

Pull Request - State: closed - Opened by rchau88 11 months ago

#38 - Add One Health Enteric BioSample Package + misc bugfixes

Pull Request - State: closed - Opened by erikwolfsohn 11 months ago - 7 comments

#37 - update template metadata with required fields for flu

Pull Request - State: closed - Opened by rchau88 11 months ago

#36 - Pandera metadata validation

Issue - State: closed - Opened by dthoward96 11 months ago - 1 comment

#35 - Issue templates to update

Issue - State: closed - Opened by dthoward96 11 months ago - 1 comment

#34 - FTP folder bug fix submit.py

Pull Request - State: closed - Opened by dthoward96 11 months ago