Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / cdcgov/polkapox issues and pull requests

#33 - [Internal] [Feature] Add Nextstrain classification to summary qc script

Issue - State: open - Opened by kyleoconnell 3 months ago
Labels: enhancement

#32 - [Internal] [Feature] Add AT Repeat Finder Script

Issue - State: open - Opened by kyleoconnell 3 months ago
Labels: enhancement

#31 - [Internal] [Feature] Validate assembly on other pox species

Issue - State: open - Opened by kyleoconnell 3 months ago
Labels: enhancement

#30 - [Internal] [Feature] Add support for amplicon data

Issue - State: open - Opened by kyleoconnell 3 months ago
Labels: enhancement

#29 - [Internal] [Feature] Add support for long read and hybrid assembly

Issue - State: open - Opened by kyleoconnell 3 months ago
Labels: enhancement

#27 - Unicyler refactoring kao Clade I Rewrite

Pull Request - State: open - Opened by kyleoconnell 5 months ago - 2 comments

#26 - Sra test data kao

Pull Request - State: closed - Opened by kyleoconnell 6 months ago - 1 comment

#25 - Create new columns in sample_summary.tsv

Pull Request - State: closed - Opened by jessicarowell 9 months ago - 4 comments

#24 - Samplesheet multilevel nesting ick4

Pull Request - State: closed - Opened by jessicarowell 9 months ago - 4 comments
Labels: enhancement

#23 - [Internal] [Feature] Add full FASTA/FASTQ paths to output summary.tsv

Issue - State: closed - Opened by mikeyweigand 9 months ago
Labels: enhancement

#23 - [Internal] [Feature] Add full FASTA/FASTQ paths to output summary.tsv

Issue - State: closed - Opened by mikeyweigand 9 months ago
Labels: enhancement

#21 - .github workflows CI

Pull Request - State: closed - Opened by kyleoconnell about 1 year ago

#20 - [Internal] [Feature] Draw bandage plots

Issue - State: closed - Opened by mikeyweigand about 1 year ago - 1 comment
Labels: enhancement

#19 - [Internal] [Bug] Unicycler contig count not captured correctly

Issue - State: open - Opened by mikeyweigand about 1 year ago
Labels: bug

#18 - [Internal] [Bug] Move Kraken DB to AWS Open Data Bucket

Issue - State: closed - Opened by kyleoconnell about 1 year ago
Labels: bug

#17 - [Internal] [Feature] Upgrade human reference in krakendb to T2T human reference

Issue - State: open - Opened by kyleoconnell about 1 year ago - 1 comment
Labels: enhancement

#14 - [Internal] [Bug] Check why output is not in nextflow.config

Issue - State: closed - Opened by jessicarowell about 1 year ago
Labels: bug

#13 - [Internal] [Feature] Create unit tests via nf-test

Issue - State: open - Opened by kyleoconnell about 1 year ago
Labels: enhancement

#12 - Update usage.md to reformat kraken2 db creation sets

Pull Request - State: closed - Opened by kyleoconnell-CDC about 1 year ago - 2 comments

#11 - Fix Kraken2 Documentation formatting under docs/usage

Issue - State: closed - Opened by kyleoconnell about 1 year ago
Labels: bug

#10 - Issue7: update README

Pull Request - State: closed - Opened by jessicarowell about 1 year ago

#9 - Issue4: Update github issue templates

Pull Request - State: closed - Opened by jessicarowell about 1 year ago

#8 - remove include line for cdc.config post migration

Pull Request - State: closed - Opened by jessicarowell about 1 year ago

#7 - Update README.md

Issue - State: closed - Opened by jessicarowell about 1 year ago - 2 comments
Labels: enhancement

#6 - Update the rest of the .github files

Issue - State: open - Opened by jessicarowell about 1 year ago - 2 comments
Labels: enhancement

#5 - Pipeline won't run when cdc.config file missing

Issue - State: closed - Opened by jessicarowell about 1 year ago - 3 comments
Labels: bug

#4 - Update issue templates

Issue - State: closed - Opened by mikeyweigand about 1 year ago - 1 comment
Labels: enhancement

#3 - Update CI

Issue - State: closed - Opened by mikeyweigand about 1 year ago - 3 comments
Labels: enhancement

#2 - Update graph reconstruction container location

Issue - State: closed - Opened by mikeyweigand about 1 year ago - 2 comments
Labels: bug

#1 - Test samplesheet needed

Issue - State: closed - Opened by mikeyweigand about 1 year ago - 1 comment
Labels: bug