Ecosyste.ms: Issues

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GitHub / cdcgov/nchhstp-dtbe-varpipe-wgs issues and pull requests

#18 - Pipeline failing/producing empty outputs

Issue - State: open - Opened by RuanSpies21 7 months ago

#18 - Pipeline failing/producing empty outputs

Issue - State: open - Opened by RuanSpies21 7 months ago

#17 - Parallel processing of samples in Varpipe_wgs

Issue - State: open - Opened by DrB-S about 1 year ago

#17 - Parallel processing of samples in Varpipe_wgs

Issue - State: open - Opened by DrB-S about 1 year ago

#16 - Only count paired-end overlaps once for depth

Pull Request - State: open - Opened by schorlton about 1 year ago

#16 - Only count paired-end overlaps once for depth

Pull Request - State: open - Opened by schorlton about 1 year ago

#15 - what is the QC standards in the pipeline?

Issue - State: open - Opened by ybdong919 over 1 year ago

#15 - what is the QC standards in the pipeline?

Issue - State: open - Opened by ybdong919 over 1 year ago

#14 - QC log : failed QC checks

Issue - State: open - Opened by ybdong919 over 1 year ago

#14 - QC log : failed QC checks

Issue - State: open - Opened by ybdong919 over 1 year ago

#11 - Docker image is not compatible with gitpod

Issue - State: open - Opened by erinyoung over 1 year ago

#11 - Docker image is not compatible with gitpod

Issue - State: open - Opened by erinyoung over 1 year ago

#10 - Retain Input Fastqs

Issue - State: closed - Opened by whottel almost 2 years ago - 2 comments

#10 - Retain Input Fastqs

Issue - State: closed - Opened by whottel almost 2 years ago - 2 comments

#9 - Running Pipeline after Local install

Issue - State: open - Opened by whottel almost 2 years ago

#9 - Running Pipeline after Local install

Issue - State: open - Opened by whottel almost 2 years ago

#8 - Singularity Installation Issues

Issue - State: closed - Opened by whottel almost 2 years ago - 2 comments

#8 - Singularity Installation Issues

Issue - State: closed - Opened by whottel almost 2 years ago - 2 comments

#7 - python2 or python 3?

Issue - State: closed - Opened by ybdong919 about 2 years ago - 1 comment

#5 - Debug the script "clockwork" in /tools/clockwork-0.11.3/

Issue - State: closed - Opened by ybdong919 about 2 years ago - 1 comment

#4 - Optional Debug the script "Varpipeline.py" in /tools/

Issue - State: closed - Opened by ybdong919 about 2 years ago - 1 comment

#3 - bug in the script "get_gatk.sh"

Issue - State: closed - Opened by ybdong919 about 2 years ago - 1 comment

#2 - Process `map_reads (1)` terminated with an error exit status (1)

Issue - State: open - Opened by ybdong919 about 2 years ago - 1 comment

#1 - AttributeError: 'module' object has no attribute 'FullLoader'

Issue - State: closed - Opened by ybdong919 about 2 years ago - 1 comment