cdcgov/dynode issues and pull requests

#234 - Add waning bin into C compartment

Issue - State: closed - Opened by arik-shurygin 3 months ago - 1 comment

#234 - Add waning bin into C compartment

Issue - State: closed - Opened by arik-shurygin 3 months ago - 1 comment

#233 - `AbstractParameters.get_parameters()` code split for interpretability

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#233 - `AbstractParameters.get_parameters()` code split for interpretability

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#232 - example azure experiment now infers

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#232 - example azure experiment now infers

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#231 - Build a stripped down version of the sampler/solver to see what is reducing our performance if anything

Issue - State: open - Opened by arik-shurygin 3 months ago - 3 comments
Labels: experiment

#231 - Build a stripped down version of the sampler/solver to see what is reducing our performance if anything

Issue - State: open - Opened by arik-shurygin 3 months ago - 3 comments
Labels: experiment

#230 - Antonio smh multiple strains

Pull Request - State: closed - Opened by antoniobgondim 3 months ago - 1 comment

#230 - Antonio smh multiple strains

Pull Request - State: closed - Opened by antoniobgondim 3 months ago - 1 comment

#229 - Antonio smh multiple strains

Pull Request - State: closed - Opened by antoniobgondim 3 months ago

#229 - Antonio smh multiple strains

Pull Request - State: closed - Opened by antoniobgondim 3 months ago

#228 - by default dont save final_timesteps variables into `checkpoint.json` added a separate function for that

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#228 - by default dont save final_timesteps variables into `checkpoint.json` added a separate function for that

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#227 - New seasonality function for covid model

Issue - State: open - Opened by SamuelBrand1 3 months ago - 2 comments
Labels: Covid modelling, experiment

#227 - New seasonality function for covid model

Issue - State: open - Opened by SamuelBrand1 3 months ago - 2 comments
Labels: Covid modelling, experiment

#226 - mypy static type checking

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#226 - mypy static type checking

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#225 - version control updates

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#225 - version control updates

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#224 - cleanup old code, remove deprecated code

Issue - State: closed - Opened by arik-shurygin 3 months ago - 1 comment

#224 - cleanup old code, remove deprecated code

Issue - State: closed - Opened by arik-shurygin 3 months ago - 1 comment

#223 - split up `abstract_parameters.get_parameters()` into 2+ methods

Issue - State: closed - Opened by arik-shurygin 3 months ago

#223 - split up `abstract_parameters.get_parameters()` into 2+ methods

Issue - State: closed - Opened by arik-shurygin 3 months ago

#222 - Split logic within `mechanistic_inferer.likelihood()` into `get_hospitalizations` and `advance_inference_algo`

Issue - State: closed - Opened by arik-shurygin 3 months ago

#222 - Split logic within `mechanistic_inferer.likelihood()` into `get_hospitalizations` and `advance_inference_algo`

Issue - State: closed - Opened by arik-shurygin 3 months ago

#221 - Further production-alize initialization scripts to reduce spoofing

Issue - State: closed - Opened by arik-shurygin 3 months ago - 2 comments

#221 - Further production-alize initialization scripts to reduce spoofing

Issue - State: closed - Opened by arik-shurygin 3 months ago - 2 comments

#220 - Split `final_timesteps_s/e/i/c` into their own file

Issue - State: closed - Opened by arik-shurygin 3 months ago

#220 - Split `final_timesteps_s/e/i/c` into their own file

Issue - State: closed - Opened by arik-shurygin 3 months ago

#219 - Download output files from Azure o local via a script rather than through GUI

Issue - State: closed - Opened by kokbent 3 months ago - 1 comment

#219 - Download output files from Azure o local via a script rather than through GUI

Issue - State: closed - Opened by kokbent 3 months ago - 1 comment

#218 - Azure batch job dependency is broken?

Issue - State: closed - Opened by kokbent 3 months ago - 1 comment

#218 - Azure batch job dependency is broken?

Issue - State: closed - Opened by kokbent 3 months ago - 1 comment

#217 - Get API docs up

Issue - State: open - Opened by arik-shurygin 3 months ago
Labels: documentation

#217 - Get API docs up

Issue - State: open - Opened by arik-shurygin 3 months ago
Labels: documentation

#216 - Explore A series Azure nodes instead of DV3

Issue - State: closed - Opened by arik-shurygin 3 months ago - 4 comments
Labels: wontfix

#215 - `diffrax` version 0.5.1 creates leaked tracer

Issue - State: closed - Opened by arik-shurygin 3 months ago - 2 comments

#215 - `diffrax` version 0.5.1 creates leaked tracer

Issue - State: closed - Opened by arik-shurygin 3 months ago - 2 comments

#212 - look into mid-fit reporting of metrics

Issue - State: open - Opened by arik-shurygin 4 months ago - 2 comments
Labels: experiment

#212 - look into mid-fit reporting of metrics

Issue - State: open - Opened by arik-shurygin 4 months ago - 2 comments
Labels: experiment

#208 - Tighten dependencies

Issue - State: closed - Opened by arik-shurygin 4 months ago - 1 comment

#208 - Tighten dependencies

Issue - State: closed - Opened by arik-shurygin 4 months ago - 1 comment

#207 - Remove `data` folder and add script to pull data from azure blob / original sources

Issue - State: open - Opened by arik-shurygin 4 months ago - 2 comments
Labels: enterprise_practices, governance

#207 - Remove `data` folder and add script to pull data from azure blob / original sources

Issue - State: open - Opened by arik-shurygin 4 months ago - 2 comments
Labels: enterprise_practices, governance

#199 - Adding stresstest function to `MechanisticInferer`

Pull Request - State: closed - Opened by SamuelBrand1 4 months ago - 4 comments

#199 - Adding stresstest function to `MechanisticInferer`

Pull Request - State: closed - Opened by SamuelBrand1 4 months ago - 4 comments

#197 - Adding stress testing utility for model inference to help isolate cause of stochastic failure in inference

Issue - State: open - Opened by SamuelBrand1 4 months ago - 3 comments
Labels: enhancement, wontfix

#192 - Inference chains/sample plots on azure visualizer

Issue - State: closed - Opened by arik-shurygin 4 months ago - 1 comment

#192 - Inference chains/sample plots on azure visualizer

Issue - State: closed - Opened by arik-shurygin 4 months ago - 1 comment

#191 - Multi-state azure visualizers

Issue - State: closed - Opened by arik-shurygin 4 months ago

#191 - Multi-state azure visualizers

Issue - State: closed - Opened by arik-shurygin 4 months ago

#190 - Spaghetti-fy posterior particle curves within `azure_visualizer`

Issue - State: closed - Opened by arik-shurygin 4 months ago - 2 comments

#190 - Spaghetti-fy posterior particle curves within `azure_visualizer`

Issue - State: closed - Opened by arik-shurygin 4 months ago - 2 comments

#186 - Interesting and probably unwanted behaviour for `strain_interaction_to_cross_immunity`

Issue - State: open - Opened by kokbent 5 months ago - 6 comments
Labels: wontfix

#186 - Interesting and probably unwanted behaviour for `strain_interaction_to_cross_immunity`

Issue - State: open - Opened by kokbent 5 months ago - 6 comments
Labels: wontfix

#185 - Shiny Azure Visualizers

Pull Request - State: closed - Opened by arik-shurygin 5 months ago - 1 comment

#185 - Shiny Azure Visualizers

Pull Request - State: closed - Opened by arik-shurygin 5 months ago - 1 comment

#183 - new md file with mathematical representation of the model named ode_m…

Pull Request - State: closed - Opened by antoniobgondim 5 months ago - 5 comments

#179 - Experiments to try different AD systems

Issue - State: open - Opened by SamuelBrand1 5 months ago
Labels: experiment

#179 - Experiments to try different AD systems

Issue - State: open - Opened by SamuelBrand1 5 months ago
Labels: experiment

#170 - Test utils

Pull Request - State: closed - Opened by arik-shurygin 5 months ago - 3 comments

#170 - Test utils

Pull Request - State: closed - Opened by arik-shurygin 5 months ago - 3 comments

#162 - Inference test seems to ingest floating point numbers

Issue - State: closed - Opened by SamuelBrand1 6 months ago - 6 comments

#162 - Inference test seems to ingest floating point numbers

Issue - State: closed - Opened by SamuelBrand1 6 months ago - 6 comments

#161 - More consideration on IHR priors?

Issue - State: open - Opened by SamuelBrand1 6 months ago - 2 comments
Labels: question, experiment

#161 - More consideration on IHR priors?

Issue - State: open - Opened by SamuelBrand1 6 months ago - 2 comments
Labels: question, experiment

#152 - Shiny app connected to Azure Output blobs

Issue - State: closed - Opened by arik-shurygin 6 months ago - 1 comment

#152 - Shiny app connected to Azure Output blobs

Issue - State: closed - Opened by arik-shurygin 6 months ago - 1 comment

#141 - Improve constant visualizations so skews of the model are easier to generate

Issue - State: closed - Opened by arik-shurygin 6 months ago

#122 - consult SMEs on our waning and cross-immunity models

Issue - State: open - Opened by arik-shurygin 7 months ago - 5 comments
Labels: enhancement

GitHub / cdcgov/dynode issues and pull requests