Ecosyste.ms: Issues

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GitHub / cdcgov/dynode issues and pull requests

#294 - uncouple tests from the `data/` folder

Issue - State: open - Opened by arik-shurygin 11 days ago

#293 - separate `dynode` into multiple repos to reduce clutter

Pull Request - State: closed - Opened by arik-shurygin 13 days ago

#292 - integrate DynODE into new 4+ repo structure

Issue - State: closed - Opened by arik-shurygin 16 days ago

#291 - Data dictionary for each possible parameter to the model

Issue - State: open - Opened by arik-shurygin 20 days ago - 4 comments
Labels: enhancement

#290 - first step to packaging azure code for moving to separate repo

Pull Request - State: closed - Opened by arik-shurygin 20 days ago - 1 comment

#289 - Example run changes directory to repository root

Pull Request - State: closed - Opened by edbaskerville 24 days ago - 2 comments

#288 - removing gitpython and cycler old packages

Pull Request - State: closed - Opened by arik-shurygin 24 days ago

#287 - ensure reproducibility and simplify the process of loading old jobs

Issue - State: open - Opened by arik-shurygin 24 days ago
Labels: enhancement, enterprise_practices

#287 - ensure reproducibility and simplify the process of loading old jobs

Issue - State: open - Opened by arik-shurygin 24 days ago
Labels: enhancement, enterprise_practices

#286 - locking cfa_azure version, adding state suffix to task ids

Pull Request - State: closed - Opened by arik-shurygin 26 days ago

#286 - locking cfa_azure version, adding state suffix to task ids

Pull Request - State: closed - Opened by arik-shurygin 26 days ago

#285 - Test using cached or pre-heated metric for NUTS sampling to decrease inference time

Issue - State: open - Opened by SamuelBrand1 26 days ago - 2 comments
Labels: experiment

#284 - rebuilding postprocessing script ordering

Pull Request - State: closed - Opened by arik-shurygin 26 days ago

#283 - Sensitivity analysis for the introduction mechanism

Issue - State: open - Opened by SamuelBrand1 26 days ago
Labels: experiment

#283 - Sensitivity analysis for the introduction mechanism

Issue - State: open - Opened by SamuelBrand1 26 days ago
Labels: experiment

#282 - Better specification Schema for postprocessing scripts

Issue - State: closed - Opened by arik-shurygin 27 days ago
Labels: enhancement, enterprise_practices

#281 - Adding the ConfigValidationError

Pull Request - State: closed - Opened by arik-shurygin 27 days ago

#280 - Adding the ConfigValidationError

Pull Request - State: closed - Opened by arik-shurygin 27 days ago - 1 comment

#280 - Adding the ConfigValidationError

Pull Request - State: closed - Opened by arik-shurygin 27 days ago - 1 comment

#279 - Better Config Errors

Issue - State: closed - Opened by arik-shurygin 27 days ago
Labels: enhancement, enterprise_practices

#278 - Priors visualizer

Pull Request - State: closed - Opened by arik-shurygin about 1 month ago

#277 - Vis utils

Pull Request - State: closed - Opened by arik-shurygin about 1 month ago

#277 - Vis utils

Pull Request - State: closed - Opened by arik-shurygin about 1 month ago

#276 - auto-generation of visualizations in azure

Issue - State: closed - Opened by arik-shurygin about 1 month ago
Labels: enhancement

#276 - auto-generation of visualizations in azure

Issue - State: closed - Opened by arik-shurygin about 1 month ago
Labels: enhancement

#275 - upgrading packages

Pull Request - State: closed - Opened by arik-shurygin about 1 month ago

#275 - upgrading packages

Pull Request - State: closed - Opened by arik-shurygin about 1 month ago

#274 - Bump starlette from 0.38.2 to 0.40.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 month ago - 1 comment
Labels: dependencies

#273 - Folding IHR into config?

Issue - State: open - Opened by kokbent about 1 month ago - 3 comments
Labels: enhancement

#273 - Folding IHR into config?

Issue - State: open - Opened by kokbent about 1 month ago - 3 comments
Labels: enhancement

#272 - remove / reduce the `data/` folder while maintaining functionality of tests and `example_end_to_end_run.py`

Issue - State: closed - Opened by arik-shurygin about 1 month ago - 1 comment
Labels: enterprise_practices

#272 - remove / reduce the `data/` folder while maintaining functionality of tests and `example_end_to_end_run.py`

Issue - State: closed - Opened by arik-shurygin about 1 month ago - 1 comment
Labels: enterprise_practices

#271 - removing the data folder from the repository as removing tracking

Pull Request - State: closed - Opened by arik-shurygin about 1 month ago - 1 comment

#270 - LaTeX rendering fixed for GitHub preview

Pull Request - State: closed - Opened by edbaskerville about 1 month ago

#270 - LaTeX rendering fixed for GitHub preview

Pull Request - State: closed - Opened by edbaskerville about 1 month ago

#269 - create shiny vis portal for immunity visualization of the populations

Issue - State: open - Opened by arik-shurygin about 1 month ago
Labels: enhancement

#269 - create shiny vis portal for immunity visualization of the populations

Issue - State: open - Opened by arik-shurygin about 1 month ago
Labels: enhancement

#268 - Ben infer hfr 240529

Pull Request - State: closed - Opened by arik-shurygin about 1 month ago

#268 - Ben infer hfr 240529

Pull Request - State: closed - Opened by arik-shurygin about 1 month ago

#267 - Add notice to readme warning of active development

Pull Request - State: closed - Opened by edbaskerville about 1 month ago

#266 - Calculate pointwise log-likelihoods and LOO elpd at the end of fitting

Issue - State: open - Opened by kokbent about 1 month ago - 1 comment
Labels: enhancement

#266 - Calculate pointwise log-likelihoods and LOO elpd at the end of fitting

Issue - State: open - Opened by kokbent about 1 month ago - 1 comment
Labels: enhancement

#265 - Add specific commit of `cfa_azure` to poetry

Issue - State: closed - Opened by kokbent about 1 month ago - 2 comments

#265 - Add specific commit of `cfa_azure` to poetry

Issue - State: closed - Opened by kokbent about 1 month ago - 2 comments

#264 - Wrap Azure setup/launch in command-line-runnable scripts

Issue - State: closed - Opened by edbaskerville about 1 month ago - 3 comments
Labels: enterprise_practices

#263 - Sanitize poetry, modules, etc.

Issue - State: open - Opened by edbaskerville about 1 month ago - 1 comment
Labels: enterprise_practices

#263 - Sanitize poetry, modules, etc.

Issue - State: open - Opened by edbaskerville about 1 month ago - 1 comment
Labels: enterprise_practices

#262 - a quick fix on the azure shiny app to get it working again

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#262 - a quick fix on the azure shiny app to get it working again

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#261 - Shiny quickfix

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#261 - Shiny quickfix

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#260 - Docker build adds all of src within.

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#260 - Docker build adds all of src within.

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#259 - new cfa_azure version breaks azure_utilities function

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#259 - new cfa_azure version breaks azure_utilities function

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#258 - Test SVI for a model where we have NUTS results

Issue - State: open - Opened by SamuelBrand1 about 2 months ago
Labels: enhancement, experiment

#257 - Fix example_end_to_end_run.py so it can be run with `poetry run`

Pull Request - State: closed - Opened by ekr-cfa about 2 months ago

#257 - Fix example_end_to_end_run.py so it can be run with `poetry run`

Pull Request - State: closed - Opened by ekr-cfa about 2 months ago

#256 - fixing a bug in timeseries creation for sero in projections

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#256 - fixing a bug in timeseries creation for sero in projections

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#255 - adding ability to specify E/C compartment axis enums

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#255 - adding ability to specify E/C compartment axis enums

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#254 - updating cfa_azure

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#254 - updating cfa_azure

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#253 - .gitignore exception for template configs

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#253 - .gitignore exception for template configs

Pull Request - State: closed - Opened by arik-shurygin about 2 months ago

#252 - Ideas to simplify the generative model for variant data

Issue - State: open - Opened by SamuelBrand1 about 2 months ago - 7 comments
Labels: enhancement, experiment

#252 - Ideas to simplify the generative model for variant data

Issue - State: open - Opened by SamuelBrand1 about 2 months ago - 7 comments
Labels: enhancement, experiment

#251 - Prior predictive checking: especially seasonal burden

Issue - State: open - Opened by SamuelBrand1 about 2 months ago
Labels: enhancement, experiment

#251 - Prior predictive checking: especially seasonal burden

Issue - State: open - Opened by SamuelBrand1 about 2 months ago
Labels: enhancement, experiment

#250 - Bump cryptography from 43.0.0 to 43.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#250 - Bump cryptography from 43.0.0 to 43.0.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 months ago
Labels: dependencies

#249 - Removing stale utils functions

Pull Request - State: closed - Opened by arik-shurygin 2 months ago - 2 comments

#249 - Removing stale utils functions

Pull Request - State: closed - Opened by arik-shurygin 2 months ago - 2 comments

#248 - adding debug mode to inferer

Pull Request - State: closed - Opened by arik-shurygin 2 months ago - 5 comments

#248 - adding debug mode to inferer

Pull Request - State: closed - Opened by arik-shurygin 2 months ago - 5 comments

#247 - shiny app to visualize immunity structure of the model

Issue - State: closed - Opened by arik-shurygin 3 months ago - 1 comment

#247 - shiny app to visualize immunity structure of the model

Issue - State: closed - Opened by arik-shurygin 3 months ago - 1 comment

#246 - cfa_azure upgrade + new pools

Pull Request - State: closed - Opened by arik-shurygin 3 months ago - 2 comments

#245 - optimize `external_i`, `seasonality`, and `vaccination_rate` functions with `jax.jit`

Issue - State: open - Opened by arik-shurygin 3 months ago - 2 comments
Labels: enhancement

#245 - optimize `external_i`, `seasonality`, and `vaccination_rate` functions with `jax.jit`

Issue - State: open - Opened by arik-shurygin 3 months ago - 2 comments
Labels: enhancement

#244 - Using `bayeux` to organize `numpyro` models and access features

Issue - State: open - Opened by SamuelBrand1 3 months ago - 3 comments
Labels: enhancement, wontfix

#244 - Using `bayeux` to organize `numpyro` models and access features

Issue - State: open - Opened by SamuelBrand1 3 months ago - 3 comments
Labels: enhancement, wontfix

#243 - file organization for package creation

Pull Request - State: closed - Opened by arik-shurygin 3 months ago - 2 comments

#243 - file organization for package creation

Pull Request - State: closed - Opened by arik-shurygin 3 months ago - 2 comments

#241 - removing old outputs, renaming folder misc -> img

Pull Request - State: closed - Opened by arik-shurygin 3 months ago - 1 comment

#241 - removing old outputs, renaming folder misc -> img

Pull Request - State: closed - Opened by arik-shurygin 3 months ago - 1 comment

#240 - Readme update

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#240 - Readme update

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#239 - adding programmatic download functions to `azure_utilities`

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#239 - adding programmatic download functions to `azure_utilities`

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#237 - removing this zone identifier file that snuck into the pr

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#236 - Prepare repo for public release

Issue - State: closed - Opened by arik-shurygin 3 months ago

#236 - Prepare repo for public release

Issue - State: closed - Opened by arik-shurygin 3 months ago

#235 - Inferer likelihood split

Pull Request - State: closed - Opened by arik-shurygin 3 months ago

#235 - Inferer likelihood split

Pull Request - State: closed - Opened by arik-shurygin 3 months ago