cdcgov/cfa-epinow2-pipeline issues and pull requests

#45 - All lowercase for disease names

Issue - State: closed - Opened by athowes about 2 months ago - 3 comments

#44 - Name for the time between infection and hosptial visit

Issue - State: closed - Opened by athowes about 2 months ago - 5 comments

#44 - Name for the time between infection and hosptial visit

Issue - State: closed - Opened by athowes about 2 months ago - 5 comments

#43 - ACR, Workflow UX, gh act, azure batch automation

Pull Request - State: closed - Opened by jkislin 2 months ago - 8 comments

#43 - ACR, Workflow UX, gh act, azure batch automation

Pull Request - State: closed - Opened by jkislin 2 months ago - 8 comments

#42 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 2 months ago - 1 comment

#42 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 2 months ago - 1 comment

#41 - Write model run outputs

Pull Request - State: closed - Opened by zsusswein 2 months ago - 3 comments

#41 - Write model run outputs

Pull Request - State: closed - Opened by zsusswein 2 months ago - 3 comments

#40 - Take 2: Fix `read_data()` incomplete return warning message

Pull Request - State: closed - Opened by zsusswein 2 months ago - 1 comment
Labels: bug

#40 - Take 2: Fix `read_data()` incomplete return warning message

Pull Request - State: closed - Opened by zsusswein 2 months ago - 1 comment
Labels: bug

#39 - Fix read_data incomplete return error messages

Pull Request - State: closed - Opened by damonbayer 2 months ago - 2 comments
Labels: bug

#39 - Fix read_data incomplete return error messages

Pull Request - State: closed - Opened by damonbayer 2 months ago - 2 comments
Labels: bug

#38 - Vignette

Issue - State: open - Opened by zsusswein 2 months ago - 2 comments
Labels: v0.2.0

#38 - Vignette

Issue - State: open - Opened by zsusswein 2 months ago - 2 comments
Labels: v0.2.0

#37 - Extensibility case study: add random walk

Issue - State: open - Opened by athowes 2 months ago - 3 comments
Labels: meta, v0.3.0+

#37 - Extensibility case study: add random walk

Issue - State: open - Opened by athowes 2 months ago - 3 comments
Labels: meta, v0.3.0+

#36 - Issue 35: Remove `add.R`

Pull Request - State: closed - Opened by athowes 2 months ago - 2 comments

#36 - Issue 35: Remove `add.R`

Pull Request - State: closed - Opened by athowes 2 months ago - 2 comments

#35 - Remove `add.R`

Issue - State: closed - Opened by athowes 2 months ago

#35 - Remove `add.R`

Issue - State: closed - Opened by athowes 2 months ago

#34 - Mention that `"US"` is an option in `state_abb` documentation

Issue - State: closed - Opened by athowes 2 months ago
Labels: documentation, v0.1.0

#33 - Providing defaults to `fit_model` and more generally

Issue - State: open - Opened by athowes 2 months ago - 1 comment

#32 - Starts Dockerfile + GitHub action for building and pushing

Pull Request - State: closed - Opened by gvegayon 2 months ago - 4 comments

#31 - Suppress only some warnings in PMF formatting

Issue - State: open - Opened by zsusswein 2 months ago - 1 comment
Labels: v0.2.0

#30 - Issue 19: Remove VS code folder

Pull Request - State: closed - Opened by athowes 2 months ago - 3 comments

#29 - Document PMF generation choices

Issue - State: open - Opened by zsusswein 2 months ago - 4 comments
Labels: v0.2.0

#28 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 2 months ago - 1 comment

#27 - Pass an excluded state from the config for aggregation

Issue - State: open - Opened by zsusswein 2 months ago - 1 comment
Labels: v0.3.0+

#26 - Fit EpiNow2 model

Pull Request - State: closed - Opened by zsusswein 2 months ago - 3 comments
Labels: v0.1.0

#25 - [2/2]: Apply exclusions to case data

Pull Request - State: closed - Opened by zsusswein 2 months ago - 5 comments
Labels: v0.1.0

#24 - Don't persist credentials so PAT is used on push

Pull Request - State: closed - Opened by zsusswein 3 months ago - 1 comment
Labels: bug

#23 - Additional small CI tweaks

Pull Request - State: closed - Opened by zsusswein 3 months ago - 2 comments
Labels: bug, v0.1.0

#22 - zs testing workflows

Pull Request - State: closed - Opened by zsusswein 3 months ago - 2 comments

#21 - zs testing workflows

Pull Request - State: closed - Opened by zsusswein 3 months ago

#20 - Bugfix: Extra paren in CI command

Pull Request - State: closed - Opened by zsusswein 3 months ago - 1 comment
Labels: bug, v0.1.0

#19 - Remove `.vscode` folder?

Issue - State: closed - Opened by athowes 3 months ago - 3 comments

#18 - Update pre-commit

Pull Request - State: closed - Opened by zsusswein 3 months ago - 1 comment
Labels: bug, v0.1.0

#17 - [1/2]: Read in case data

Pull Request - State: closed - Opened by zsusswein 3 months ago - 10 comments
Labels: v0.1.0

#16 - Read in parameter PMFs

Pull Request - State: closed - Opened by zsusswein 3 months ago - 3 comments
Labels: v0.1.0

#15 - Meta: v0.1.0

Issue - State: open - Opened by zsusswein 3 months ago
Labels: v0.1.0, meta

#13 - Updated authorship and added package authorship guidelines

Pull Request - State: closed - Opened by kgostic 3 months ago - 1 comment
Labels: documentation, v0.1.0

#12 - Expand on package functionality and data schema in the README

Issue - State: open - Opened by zsusswein 3 months ago
Labels: documentation, v0.1.0

#11 - Document package scope in README

Pull Request - State: closed - Opened by zsusswein 3 months ago - 1 comment
Labels: documentation, v0.1.0

#10 - Move to cmdstanr backend

Issue - State: open - Opened by zsusswein 3 months ago
Labels: v0.2.0

#9 - Manage version bump of EpiNow2

Issue - State: open - Opened by zsusswein 3 months ago - 1 comment
Labels: v0.2.0

#8 - Kg modify azure blob interface

Pull Request - State: closed - Opened by kgostic 3 months ago - 1 comment

#7 - Config reader with expected schema validation

Pull Request - State: open - Opened by zsusswein 3 months ago - 3 comments

#6 - Roxygen2 render breaking in pre-commit

Issue - State: closed - Opened by zsusswein 3 months ago
Labels: bug, documentation, v0.1.0

#5 - Add Azure file download

Pull Request - State: closed - Opened by zsusswein 3 months ago
Labels: v0.1.0

#4 - Follow-up package fixes

Pull Request - State: closed - Opened by zsusswein 3 months ago
Labels: bug, v0.1.0

#3 - Author/contributor in DESCRIPTION

Issue - State: closed - Opened by zsusswein 3 months ago
Labels: v0.1.0

#2 - Setup R package

Pull Request - State: closed - Opened by zsusswein 3 months ago - 4 comments
Labels: v0.1.0

#1 - Run pre-commit over initial files

Pull Request - State: closed - Opened by zsusswein 3 months ago - 2 comments

GitHub / cdcgov/cfa-epinow2-pipeline issues and pull requests