cdanielmachado/smetana issues and pull requests

#49 - Parallelization

Issue - State: open - Opened by KageyamaTakuya 13 days ago

#48 - Not a mixed-integer problem

Issue - State: open - Opened by phil622 about 2 months ago

#47 - runing smetana return SystemError: <built-in function delete_ListWrapperCVTerm> returned a result with an error set

Issue - State: closed - Opened by phil622 about 2 months ago

#46 - Fails to find a minimal growth medium for photosynthetic organism

Issue - State: open - Opened by GediminasA 3 months ago

#45 - Re-order output file to follow SIF formatting

Issue - State: open - Opened by winatony 5 months ago

#44 - Comparative Analysis of MIP and MRO Across Variable MAG Compositions and Investigating Cross-Feeding Pathways in Microbial Communities

Issue - State: closed - Opened by Noob-Monkey 6 months ago - 4 comments

#43 - How to simulate large numbers of communities

Issue - State: open - Opened by LiZhihua1982 9 months ago

#42 - optimality is not an available tolerance parameter with this solver

Issue - State: open - Opened by LiZhihua1982 about 1 year ago

#41 - Adjusting the non-CarveMe GEMs to SMETANA

Issue - State: closed - Opened by wupeng1998 over 1 year ago

#40 - Specifying compartment identifiers

Issue - State: open - Opened by xlmf over 1 year ago

#39 - CarveMe Models without Gap Filling for Smetana

Issue - State: open - Opened by pbelmann over 1 year ago - 8 comments

#38 - The model cannot be read.

Issue - State: open - Opened by ChenCongZ over 1 year ago

#37 - issues when add -c communities

Issue - State: closed - Opened by qikongwanli over 1 year ago - 2 comments

#36 - Adjusting the non-CarveMe GEMs to SMETANA

Issue - State: open - Opened by mohammadmirhakkak almost 2 years ago - 2 comments

#35 - smetana is not is not recognized as command

Issue - State: open - Opened by Clem-Jos almost 2 years ago - 1 comment

#34 - Inconsistent results of MIP calculation and community minimum growth requirement

Issue - State: open - Opened by EmmettPeng about 2 years ago - 2 comments

#33 - Got an empty file with only the header

Issue - State: open - Opened by zoelwl over 2 years ago - 3 comments

#32 - Issues when running with a 10 member community

Issue - State: open - Opened by amarsh26 over 2 years ago

#31 - RuntimeError: No solver available.

Issue - State: closed - Opened by zburcham over 2 years ago - 1 comment

#30 - Identifying minimal medium composition in detailed interactions

Issue - State: closed - Opened by franciscozorrilla over 2 years ago - 1 comment

#29 - Cross-feeding interaction untraceable metabolites

Issue - State: closed - Opened by iuliachiciudean over 2 years ago - 3 comments

#28 - MRO: Failed to find a valid solution

Issue - State: open - Opened by iuliachiciudean about 3 years ago

#27 - Reg constructing eukaryotic GSM - CarveMe

Issue - State: closed - Opened by NTDevika about 3 years ago - 1 comment

#26 - smetana running error: Assertion failed: teta >= 0.0

Issue - State: closed - Opened by EmmettPeng about 3 years ago - 5 comments

#25 - Query regarding nature of gapfilled carveme models for smetana use

Issue - State: closed - Opened by shreyanshumale about 3 years ago - 1 comment

#24 - Atomic weight not listed for elements

Issue - State: closed - Opened by Rachita-Kumar over 3 years ago - 1 comment

#23 - "Reaction R_EX_M_h2o_e_pool not found" error

Issue - State: open - Opened by jdwinkler-lanzatech over 3 years ago - 3 comments

#22 - N/A from MIP but value from MRO.

Issue - State: open - Opened by zburcham over 3 years ago - 17 comments

#21 - Compatibility with AGORA

Issue - State: closed - Opened by arianccbasile over 3 years ago - 4 comments

#20 - Changes in result for -d and -g

Issue - State: open - Opened by ntromas over 3 years ago - 4 comments

#19 - Co-occurrent bacteria

Issue - State: closed - Opened by ntromas over 3 years ago - 4 comments

#18 - Segmentation fault

Issue - State: closed - Opened by pbelmann over 3 years ago - 9 comments

#17 - Different results and run time of detailed analysis

Issue - State: closed - Opened by vrmarcelino over 3 years ago - 2 comments

#16 - Compare MRO and MIP across samples

Issue - State: closed - Opened by chenyj8 over 3 years ago - 1 comment

#15 - No output rows in SMETANA detailed.tsv

Issue - State: closed - Opened by eltanin4 over 3 years ago - 1 comment

#14 - SCS and MPS from detailed analysis are always 1

Issue - State: closed - Opened by nigiord over 3 years ago - 1 comment

#13 - failing to find medium

Issue - State: open - Opened by cdanielmachado almost 4 years ago

#12 - Smetana on Gapseq models

Issue - State: closed - Opened by arianccbasile about 4 years ago - 7 comments

#11 - No solver available

Issue - State: closed - Opened by joeyxu95 about 4 years ago - 3 comments

#10 - Different MIP and MRO scores for same input -SMETANA

Issue - State: closed - Opened by NTDevika over 4 years ago - 5 comments

#9 - AttributeError: issues loading carveme models

Issue - State: closed - Opened by roschlec over 4 years ago - 1 comment

#8 - Is it possible to generate the list of cross-fed metabolites between the pair of organism

Issue - State: closed - Opened by NTDevika over 4 years ago - 1 comment

#7 - Model loading Issue with Smetana

Issue - State: closed - Opened by NTDevika over 4 years ago - 3 comments

#6 - Pip install not working in python 2.7

Issue - State: closed - Opened by rafafernandes96 over 4 years ago - 2 comments

#5 - switch to Reframed

Pull Request - State: closed - Opened by cdanielmachado almost 5 years ago

#4 - Development

Pull Request - State: closed - Opened by cdanielmachado over 5 years ago

#3 - Can't load models to create a community

Issue - State: closed - Opened by cmrac over 5 years ago

#2 - Failing calculations for global.tsv

Issue - State: closed - Opened by rdmtinez over 5 years ago - 2 comments

#1 - Empty detailed.tsv

Issue - State: closed - Opened by rdmtinez almost 6 years ago - 8 comments

GitHub / cdanielmachado/smetana issues and pull requests