Ecosyste.ms: Issues

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GitHub / cdanielmachado/reframed issues and pull requests

#29 - Fixes on the last update

Pull Request - State: open - Opened by lhtxa 4 months ago

#28 - Use `set()` instead of `[]` for `var_ids` in Solver

Issue - State: open - Opened by Prunoideae 7 months ago - 2 comments

#26 - Transcriptomics usage

Issue - State: open - Opened by FelipeMelis 12 months ago - 4 comments

#25 - Bug report: cannot import name 'compress' from 'scipy'

Issue - State: closed - Opened by Hocnonsense about 1 year ago - 2 comments

#24 - Adding reactions

Issue - State: open - Opened by amarsh26 about 1 year ago

#23 - Fix io annotations

Pull Request - State: closed - Opened by sulheim about 1 year ago

#22 - Parse XML Annotations

Pull Request - State: closed - Opened by sulheim over 1 year ago

#21 - Annotations not properly parsed

Issue - State: open - Opened by sulheim over 1 year ago

#20 - Question about loading models

Issue - State: open - Opened by amarsh26 over 1 year ago

#19 - Update cplex_solver.py

Pull Request - State: closed - Opened by rcolpo over 1 year ago

#18 - set_gpr_association does not remove genes

Issue - State: open - Opened by IdunBurgos almost 2 years ago

#17 - questions about Environment class

Issue - State: closed - Opened by amarsh26 almost 2 years ago - 2 comments

#16 - Update package on PyPI

Issue - State: open - Opened by yaccos over 2 years ago

#15 - Optlang solver edits

Pull Request - State: closed - Opened by freiburgermsu over 2 years ago - 1 comment

#13 - Infeasible or Unbounded in reframed while solvable by cobrapy

Issue - State: open - Opened by ccshao over 2 years ago

#11 - Solver disregards previous set objectives

Issue - State: open - Opened by yaccos almost 3 years ago

#9 - Declare `reframed.solvers.solver.Solver` an abstract base class

Issue - State: open - Opened by yaccos almost 3 years ago - 1 comment

#8 - Having class `Status` in top-level API would be useful

Issue - State: open - Opened by yaccos almost 3 years ago - 3 comments

#7 - Fix Iterable imports in all places.

Pull Request - State: closed - Opened by sirno about 3 years ago - 1 comment

#6 - Import Iterable from collections.abc

Pull Request - State: closed - Opened by sirno about 3 years ago - 1 comment

#4 - load gene annotations in load_cbmodel()

Issue - State: open - Opened by EmanuelGoncalves about 3 years ago

#3 - Check for fbc plugin

Issue - State: closed - Opened by JosuaCarl about 3 years ago - 2 comments

#2 - Models not growing anymore after update

Issue - State: closed - Opened by silvtal almost 4 years ago - 1 comment

#1 - Objective is none

Issue - State: closed - Opened by pbelmann almost 4 years ago - 3 comments