Ecosyste.ms: Issues

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GitHub / cctbx/dxtbx issues and pull requests

#638 - Reporting a vulnerability

Issue - State: closed - Opened by argusSecurityBot about 1 year ago - 1 comment

#637 - Bruker general Photon format

Pull Request - State: closed - Opened by dagewa about 1 year ago - 1 comment

#636 - Add include-guarded ref_pickle_double_buffered.h

Pull Request - State: closed - Opened by ndevenish about 1 year ago - 1 comment

#635 - Wrong geometry from FullCBFs from Bruker D8 Venture

Issue - State: closed - Opened by dagewa about 1 year ago - 2 comments

#634 - Imageset slicing

Pull Request - State: closed - Opened by dagewa about 1 year ago - 1 comment

#633 - Imageset slicing is broken by batch offset

Issue - State: closed - Opened by dagewa about 1 year ago - 12 comments

#632 - Workaround change to DECTRIS file writer

Pull Request - State: closed - Opened by graeme-winter about 1 year ago - 8 comments
Labels: backported

#631 - Nxmx bit depth image

Pull Request - State: closed - Opened by graeme-winter about 1 year ago - 6 comments

#630 - Handle no conda for system_includes

Pull Request - State: closed - Opened by phyy-nx about 1 year ago - 1 comment

#629 - Nxmx mask

Pull Request - State: open - Opened by dwpaley about 1 year ago - 6 comments

#627 - Break the DIALS/xfel circular dependency

Pull Request - State: closed - Opened by phyy-nx about 1 year ago - 6 comments

#626 - Fixes for EMBL beamlines at PETRA

Pull Request - State: closed - Opened by christianbecke about 1 year ago - 5 comments

#625 - Add array family to install env

Pull Request - State: closed - Opened by toastisme about 1 year ago - 1 comment
Labels: backport

#624 - NXmx: convert `int64` to `int32` if `bit_depth_readout<=32`

Issue - State: open - Opened by rjgildea about 1 year ago - 4 comments

#623 - Add axis inversion

Pull Request - State: closed - Opened by graeme-winter about 1 year ago - 3 comments

#622 - Add sample to source distance to Beam

Pull Request - State: closed - Opened by toastisme about 1 year ago - 6 comments

#621 - Add polychromatic beam

Pull Request - State: closed - Opened by toastisme about 1 year ago - 2 comments

#620 - Add properties table to Scan

Pull Request - State: open - Opened by toastisme about 1 year ago - 12 comments

#619 - Remove negative oscillation checks

Pull Request - State: closed - Opened by toastisme about 1 year ago - 6 comments
Labels: PR: merge conflicts

#618 - `flumpy`: add support for `flex.miller_index`

Pull Request - State: closed - Opened by rjgildea about 1 year ago - 2 comments

#617 - Update FormatSMVRigakuSaturn to recognise multi-axis crystal goniometers

Pull Request - State: closed - Opened by jamesrhester about 1 year ago - 6 comments

#615 - NXmx general writer

Pull Request - State: closed - Opened by phyy-nx over 1 year ago - 6 comments

#614 - Tidy model_ext namespacing and turn on Unity builds

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 2 comments

#612 - NXmx: handle multidimensional arrays

Pull Request - State: closed - Opened by phyy-nx over 1 year ago - 6 comments

#611 - Ignore deprecated `pkg_resources.declare_namespace` warnings

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 1 comment

#610 - dxtbx.plot_detector_models fixes for multiple single-panel detector models

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 4 comments

#609 - nexus: Fix case where uint wasn't coerced to int

Pull Request - State: closed - Opened by ndevenish over 1 year ago

#608 - Fix FormatNXmx test on Windows

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment

#607 - Flumpy: Prefer int instead of long when same size

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment
Labels: windows support

#606 - Explicitly convert Image data types

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment

#605 - Fix windows libtbx-build compilation for modern C++

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment

#604 - Run CMake CI build/tests on Windows

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment
Labels: windows support

#603 - flumpy: Fix numpy deprecation warning in tests

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment

#602 - DLS-only regression data files: Check file directly

Pull Request - State: closed - Opened by ndevenish over 1 year ago - 1 comment

#601 - cbf_writer: cctbx function expects `trusted_range`

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 1 comment

#600 - Update smargon masking test dataset

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 1 comment

#599 - Use standard C++11 features instead of boost equivalents

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 1 comment

#598 - Stop using np.float

Pull Request - State: closed - Opened by dwpaley over 1 year ago - 1 comment

#597 - Use standalone ``nxmx`` package

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 1 comment

#596 - Put walrus operators back in

Pull Request - State: closed - Opened by dwpaley over 1 year ago - 4 comments

#595 - Cbf trusted range

Pull Request - State: closed - Opened by dwpaley over 1 year ago - 1 comment

#594 - Ensure conversion to `flex.int` via conversion to `np.intc`

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 4 comments

#593 - Flumpy (?) long vs int issue on Windows

Issue - State: closed - Opened by rjgildea over 1 year ago - 5 comments

#592 - For FullCBFs, try underload before falling back on undefined

Pull Request - State: closed - Opened by phyy-nx over 1 year ago - 2 comments

#591 - remove walrus operators to be less-incompatible with py37

Pull Request - State: closed - Opened by dwpaley over 1 year ago - 1 comment

#590 - FormatXTCRayonix: fix max trusted value (see cctbx/cctbx_project#825)

Pull Request - State: closed - Opened by dwpaley over 1 year ago - 1 comment

#589 - Include vacuum flange mask for the SINGLA at eBIC

Pull Request - State: closed - Opened by dagewa over 1 year ago - 2 comments

#588 - NXmx: fallback on beam_center_{x,y}

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 1 comment

#587 - Trusted range fix for FormatCBFFull

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 3 comments

#586 - `FormatNXmx` fixes for DECTRIS EIGER Filewriter

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 4 comments

#585 - Misreading trusted range for Eiger data collected with DECTRIS file writer

Issue - State: closed - Opened by graeme-winter over 1 year ago - 10 comments

#584 - Fallback on legacy FormatNexus for Dectris filewriter images

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 1 comment

#583 - FormatNXmxED

Pull Request - State: closed - Opened by dagewa over 1 year ago - 1 comment

#582 - Support Dectris filewriter images in FormatNXmx

Issue - State: closed - Opened by graeme-winter over 1 year ago

#581 - BioMAX / NXmx

Pull Request - State: closed - Opened by graeme-winter over 1 year ago

#580 - Rigaku RAXIS IV: do not assume Spring8 example

Issue - State: open - Opened by graeme-winter over 1 year ago

#579 - Exclude ED images from eBIC from being picked up by FormatNXmxDLS

Pull Request - State: closed - Opened by dagewa over 1 year ago - 1 comment

#578 - Allow lazyness of a class to be controlled with format_kwargs

Pull Request - State: closed - Opened by jbeilstenedmands over 1 year ago - 3 comments

#577 - Exclude electron diffraction images from being picked up by FormatNXmxDLS

Pull Request - State: closed - Opened by dagewa over 1 year ago - 6 comments

#576 - Revisit the question of lazy loading

Issue - State: open - Opened by graeme-winter over 1 year ago - 2 comments

#575 - Beam model should state probe type

Issue - State: closed - Opened by dagewa over 1 year ago - 3 comments

#574 - Fix dxtbx.plot_detector_models for new versions of matplotlib

Pull Request - State: closed - Opened by phyy-nx over 1 year ago - 3 comments

#572 - Avoid potential divide-by-zero warning in sanity check

Pull Request - State: closed - Opened by rjgildea over 1 year ago - 2 comments

#571 - Mpi image average2

Pull Request - State: closed - Opened by dwmoreau over 1 year ago - 1 comment

#570 - Remove datablock

Pull Request - State: closed - Opened by graeme-winter over 1 year ago - 15 comments

#569 - Add VMXm to Eiger legcy dimensions list

Pull Request - State: closed - Opened by graeme-winter over 1 year ago - 3 comments

#568 - Regression in Eiger 9M support compared with dials 3.8: data dimensions

Issue - State: closed - Opened by trincao over 1 year ago - 1 comment

#567 - Remove printing of error

Pull Request - State: closed - Opened by graeme-winter over 1 year ago - 1 comment

#566 - We should [not] use assert to control program flow?

Issue - State: open - Opened by graeme-winter over 1 year ago - 2 comments

#565 - Nexus redundant slicing

Pull Request - State: closed - Opened by dwpaley over 1 year ago - 6 comments

#564 - CBF origin vectors off by half a pixel

Issue - State: open - Opened by phyy-nx over 1 year ago

#563 - Remove a vestigial test

Pull Request - State: closed - Opened by dwpaley over 1 year ago - 4 comments

#561 - NXmx equipment component

Pull Request - State: closed - Opened by phyy-nx over 1 year ago - 7 comments

#560 - test_compress_decompress failure on arm64, ppc64el, and s390x

Issue - State: closed - Opened by picca almost 2 years ago - 6 comments

#559 - FullCBF trusted range

Issue - State: closed - Opened by phyy-nx almost 2 years ago - 13 comments

#558 - Ignore Datablock deprecation warnings in tests

Pull Request - State: closed - Opened by ndevenish almost 2 years ago - 1 comment

#557 - Use C++14 in the CMake build

Pull Request - State: closed - Opened by ndevenish almost 2 years ago - 1 comment

#556 - Fix DLS-only tests for new trusted range

Pull Request - State: closed - Opened by dagewa almost 2 years ago - 2 comments

#555 - DLS only format tests are broken

Issue - State: closed - Opened by ndevenish almost 2 years ago

#552 - the hdf5 path logic hide the system installed plugins on Debian/Ubuntu/...

Issue - State: closed - Opened by picca almost 2 years ago - 1 comment

#551 - where are listed the python dependencies of dxtbx

Issue - State: closed - Opened by picca almost 2 years ago

#542 - Dectris file writer writes inverted beam; won't fix

Issue - State: open - Opened by graeme-winter almost 2 years ago - 8 comments

#535 - DIALS test_convert_to_cbf is failing on Windows

Issue - State: closed - Opened by dagewa almost 2 years ago - 1 comment

#517 - LCLS XFEL updates

Pull Request - State: closed - Opened by phyy-nx about 2 years ago - 1 comment

#504 - Stage 1 remove datablock

Pull Request - State: closed - Opened by graeme-winter over 2 years ago - 10 comments

#503 - Make ScanBase polymorphic

Pull Request - State: closed - Opened by toastisme over 2 years ago - 3 comments
Labels: PR: merge conflicts

#501 - Update and enable dlsnxs2cbf tests

Pull Request - State: open - Opened by benjaminhwilliams over 2 years ago
Labels: PR: merge conflicts

#492 - Add time-of-flight beam

Pull Request - State: closed - Opened by toastisme over 2 years ago - 3 comments

#491 - Remove useless asserts

Pull Request - State: open - Opened by graeme-winter over 2 years ago - 5 comments
Labels: PR: merge conflicts

#443 - Initial support for Rigaku Hypix 6000

Pull Request - State: closed - Opened by graeme-winter over 2 years ago - 4 comments

#439 - Flumpy: Single entry vec_from_numpy gives unexpected results

Issue - State: closed - Opened by ndevenish almost 3 years ago

#432 - Apply bit_depth_readout to set masked values to -1 or -2

Pull Request - State: closed - Opened by rjgildea almost 3 years ago - 1 comment

#396 - Add dxtbx Azure builds for Windows

Issue - State: closed - Opened by Anthchirp almost 3 years ago - 2 comments
Labels: windows support