cboettig/nonparametric-bayes issues and pull requests

#59 - link in "about" repo landing 404

Issue - State: open - Opened by trashbirdecology about 4 years ago

#58 - fix log likelihood term

Pull Request - State: open - Opened by cboettig over 4 years ago

#57 - Syntax issue on string 40

Pull Request - State: closed - Opened by kant over 5 years ago - 1 comment

#56 - Include explicit returns to simplify conditional logic

Pull Request - State: closed - Opened by Ironholds almost 9 years ago - 6 comments

#56 - Include explicit returns to simplify conditional logic

Pull Request - State: closed - Opened by Ironholds almost 9 years ago - 6 comments

#55 - files on the docker image

Issue - State: closed - Opened by benmarwick almost 10 years ago - 9 comments

#55 - files on the docker image

Issue - State: closed - Opened by benmarwick almost 10 years ago - 9 comments

#54 - don't you use a spell-checker? ;)

Pull Request - State: closed - Opened by benmarwick almost 10 years ago - 2 comments

#53 - fix two small typos

Pull Request - State: closed - Opened by benmarwick almost 10 years ago - 1 comment

#53 - fix two small typos

Pull Request - State: closed - Opened by benmarwick almost 10 years ago - 1 comment

#52 - speeding up Cholesky method with chol2inv?

Issue - State: open - Opened by davharris almost 10 years ago - 6 comments

#52 - speeding up Cholesky method with chol2inv?

Issue - State: open - Opened by davharris almost 10 years ago - 6 comments

#51 - transpose cholesky decomposition

Pull Request - State: closed - Opened by davharris almost 11 years ago - 5 comments

#50 - Semi-analytic posteriors by integration and grid search

Issue - State: open - Opened by cboettig over 11 years ago
Labels: high priority, analysis

#49 - add missing word?

Pull Request - State: closed - Opened by davharris over 11 years ago - 1 comment

#48 - Use ADMB estimates for MLE

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: med priority, analysis

#47 - Add note/example on simply comparing models by AIC/BIC/DIC etc

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, manuscript, analysis

#47 - Add note/example on simply comparing models by AIC/BIC/DIC etc

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, manuscript, analysis

#46 - Tidy code in allen.Rmd, internalize all BUGS scripts into the R code

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: analysis

#46 - Tidy code in allen.Rmd, internalize all BUGS scripts into the R code

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: analysis

#45 - Vary the utility function / costs / risk relation

Issue - State: open - Opened by cboettig over 11 years ago - 1 comment
Labels: med priority, analysis

#44 - Plot estimated functions against original data

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment

#44 - Plot estimated functions against original data

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment

#43 - add parametric Bayesian version of Ricker

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#43 - add parametric Bayesian version of Ricker

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#42 - add Parametric Bayesian version of Myers model

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#42 - add Parametric Bayesian version of Myers model

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#41 - Comparison against an active learning parametric model (facing a tipping point)

Issue - State: open - Opened by cboettig over 11 years ago - 1 comment
Labels: low priority, analysis

#41 - Comparison against an active learning parametric model (facing a tipping point)

Issue - State: open - Opened by cboettig over 11 years ago - 1 comment
Labels: low priority, analysis

#40 - Comparison against a fully Bayesian parametric model

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#40 - Comparison against a fully Bayesian parametric model

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#39 - Estimate parameter uncertainty for the MLE case and integrate over it

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#39 - Estimate parameter uncertainty for the MLE case and integrate over it

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#38 - Abstract

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#38 - Abstract

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#37 - Concluding paragraph following "further directions"

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: manuscript

#37 - Concluding paragraph following "further directions"

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: manuscript

#36 - Figure comparing profit distribution against optimal

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, Figures

#36 - Figure comparing profit distribution against optimal

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, Figures

#35 - Simulate example in which noise has structure, allows GP to capture that structure

Issue - State: open - Opened by cboettig over 11 years ago
Labels: med priority, analysis

#35 - Simulate example in which noise has structure, allows GP to capture that structure

Issue - State: open - Opened by cboettig over 11 years ago
Labels: med priority, analysis

#34 - Example of how we can add broad-brush constraints to the nonparametric bayesian model

Issue - State: open - Opened by cboettig over 11 years ago - 1 comment
Labels: low priority, analysis

#34 - Example of how we can add broad-brush constraints to the nonparametric bayesian model

Issue - State: open - Opened by cboettig over 11 years ago - 1 comment
Labels: low priority, analysis

#33 - Compare against fully Bayesian parametric inference case instead of MLEs

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#32 - Figure 5: sensitivity analysis

Issue - State: open - Opened by cboettig over 11 years ago
Labels: high priority, Figures

#32 - Figure 5: sensitivity analysis

Issue - State: open - Opened by cboettig over 11 years ago
Labels: high priority, Figures

#31 - Add code explicitly rather than rely on custom but non-generic functions

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: manuscript

#31 - Add code explicitly rather than rely on custom but non-generic functions

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: manuscript

#30 - More context of nonparametric heirarchical bayesian modeling elsewhere

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#30 - More context of nonparametric heirarchical bayesian modeling elsewhere

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#29 - Methods: Background on adapting GP to SDP must be less technical

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#29 - Methods: Background on adapting GP to SDP must be less technical

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#28 - Tighten up introduction

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#28 - Tighten up introduction

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#27 - Add missing references

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#27 - Add missing references

Issue - State: closed - Opened by cboettig over 11 years ago
Labels: manuscript

#26 - Demonstrate that infinite-horizon problem with discounting resolves the uncertainty paradox

Issue - State: closed - Opened by cboettig over 11 years ago - 1 comment
Labels: high priority, analysis

#25 - Add example of replicate draws from the posterior?

Issue - State: open - Opened by cboettig over 11 years ago - 2 comments
Labels: low priority, Figures

#25 - Add example of replicate draws from the posterior?

Issue - State: open - Opened by cboettig over 11 years ago - 2 comments
Labels: low priority, Figures

#24 - send draft for friendly review

Issue - State: closed - Opened by cboettig almost 12 years ago - 3 comments
Labels: manuscript

#24 - send draft for friendly review

Issue - State: closed - Opened by cboettig almost 12 years ago - 3 comments
Labels: manuscript

#23 - finish paper outline, initial figures

Issue - State: closed - Opened by cboettig almost 12 years ago
Labels: high priority

#22 - Minor modifications for the replicate comparisons

Issue - State: closed - Opened by cboettig almost 12 years ago - 1 comment

#22 - Minor modifications for the replicate comparisons

Issue - State: closed - Opened by cboettig almost 12 years ago - 1 comment

#21 - add Multiple step ahead SDP solutions

Issue - State: open - Opened by cboettig almost 12 years ago
Labels: low priority, analysis

#20 - Compare against correct parametric model with parameters estimated from the data

Issue - State: closed - Opened by cboettig almost 12 years ago
Labels: high priority

#20 - Compare against correct parametric model with parameters estimated from the data

Issue - State: closed - Opened by cboettig almost 12 years ago
Labels: high priority

#19 - Vary harvest policy during the observation stage

Issue - State: closed - Opened by cboettig almost 12 years ago
Labels: high priority

#19 - Vary harvest policy during the observation stage

Issue - State: closed - Opened by cboettig almost 12 years ago
Labels: high priority

#18 - Add prior & posterior graphs (on same plot) to standard analysis (i.e. gaussian-process-control.R)

Issue - State: closed - Opened by cboettig almost 12 years ago - 1 comment
Labels: high priority

#18 - Add prior & posterior graphs (on same plot) to standard analysis (i.e. gaussian-process-control.R)

Issue - State: closed - Opened by cboettig almost 12 years ago - 1 comment
Labels: high priority

#17 - GP process plots should show with and without nugget variance

Issue - State: closed - Opened by cboettig almost 12 years ago
Labels: high priority

#16 - examples with non-stationary dynamics (e.g. Ricker with oscillations)

Issue - State: closed - Opened by cboettig almost 12 years ago - 1 comment
Labels: high priority

#16 - examples with non-stationary dynamics (e.g. Ricker with oscillations)

Issue - State: closed - Opened by cboettig almost 12 years ago - 1 comment
Labels: high priority

#15 - Consider active learning approaches, RL, Q-learning

Issue - State: open - Opened by cboettig almost 12 years ago
Labels: low priority, analysis

#15 - Consider active learning approaches, RL, Q-learning

Issue - State: open - Opened by cboettig almost 12 years ago
Labels: low priority, analysis

#14 - evaluate GP under large noise conditions

Issue - State: closed - Opened by cboettig almost 12 years ago - 3 comments

#14 - evaluate GP under large noise conditions

Issue - State: closed - Opened by cboettig almost 12 years ago - 3 comments

#13 - Add tgp method to gp_fit, with support for conditioning on observation 0,0

Issue - State: closed - Opened by cboettig almost 12 years ago - 2 comments

#13 - Add tgp method to gp_fit, with support for conditioning on observation 0,0

Issue - State: closed - Opened by cboettig almost 12 years ago - 2 comments

#12 - Characterize and develop a strategy for inferred GP that are not self-sustaining

Issue - State: closed - Opened by cboettig almost 12 years ago - 1 comment
Labels: high priority, analysis

#12 - Characterize and develop a strategy for inferred GP that are not self-sustaining

Issue - State: closed - Opened by cboettig almost 12 years ago - 1 comment
Labels: high priority, analysis

#11 - Consider measurement error in the forward simulations

Issue - State: open - Opened by cboettig almost 12 years ago - 2 comments
Labels: low priority, analysis

#10 - Add scrap value to handle cases in which GP inferred does not persist

Issue - State: closed - Opened by cboettig almost 12 years ago - 2 comments

#10 - Add scrap value to handle cases in which GP inferred does not persist

Issue - State: closed - Opened by cboettig almost 12 years ago - 2 comments

#9 - Derive the limiting Gaussian Process from the parametric model

Issue - State: open - Opened by cboettig almost 12 years ago
Labels: low priority, analysis

#9 - Derive the limiting Gaussian Process from the parametric model

Issue - State: open - Opened by cboettig almost 12 years ago
Labels: low priority, analysis

#8 - Add routine for estimating parametric models for comparison (e.g. by MLE)

Issue - State: closed - Opened by cboettig almost 12 years ago - 3 comments
Labels: med priority

#8 - Add routine for estimating parametric models for comparison (e.g. by MLE)

Issue - State: closed - Opened by cboettig almost 12 years ago - 3 comments
Labels: med priority

#7 - implement multi-dimensional example

Issue - State: open - Opened by cboettig almost 12 years ago
Labels: low priority, analysis

#6 - Implementation via tgp package

Issue - State: closed - Opened by cboettig about 12 years ago - 2 comments
Labels: high priority

#6 - Implementation via tgp package

Issue - State: closed - Opened by cboettig about 12 years ago - 2 comments
Labels: high priority

#5 - Explore alternative covariance kernels

Issue - State: open - Opened by cboettig about 12 years ago
Labels: low priority, analysis

#5 - Explore alternative covariance kernels

Issue - State: open - Opened by cboettig about 12 years ago
Labels: low priority, analysis

#4 - Implement sequential updating for numerical stability

Issue - State: closed - Opened by cboettig about 12 years ago - 3 comments
Labels: low priority

#4 - Implement sequential updating for numerical stability

Issue - State: closed - Opened by cboettig about 12 years ago - 3 comments
Labels: low priority

#3 - GP optimized hyperparameters

Issue - State: closed - Opened by cboettig about 12 years ago - 2 comments
Labels: med priority

#3 - GP optimized hyperparameters

Issue - State: closed - Opened by cboettig about 12 years ago - 2 comments
Labels: med priority

#2 - Implement Choleski decomposition approach and compare to direct calculation

Issue - State: closed - Opened by cboettig about 12 years ago - 4 comments
Labels: low priority

#2 - Implement Choleski decomposition approach and compare to direct calculation

Issue - State: closed - Opened by cboettig about 12 years ago - 4 comments
Labels: low priority

GitHub / cboettig/nonparametric-bayes issues and pull requests