Ecosyste.ms: Issues

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GitHub / cbg-ethz/smallgenomeutilities issues and pull requests

#26 - Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#25 - [FIX] unexpected columns in FS report with --no-english

Pull Request - State: open - Opened by mcarrara-bioinfo over 1 year ago

#24 - TODO/missing features

Issue - State: open - Opened by DrYak over 1 year ago

#23 - add V-pipe primers prep script and tests

Pull Request - State: closed - Opened by mcarrara-bioinfo over 1 year ago

#22 - Wrong pandas version

Issue - State: closed - Opened by LaraFuhrmann over 1 year ago - 1 comment

#21 - added testdata for stopcodon detection

Pull Request - State: closed - Opened by mcarrara-bioinfo almost 2 years ago - 1 comment

#20 - Stopcodon testdata

Pull Request - State: closed - Opened by mcarrara-bioinfo almost 2 years ago

#19 - Indel detection does not match consensus for events in tandem

Issue - State: open - Opened by mcarrara-bioinfo almost 2 years ago
Labels: bug

#18 - corner-case testing for frameshift indel and stop codon script

Issue - State: closed - Opened by mcarrara-bioinfo almost 2 years ago
Labels: enhancement

#17 - frameshift needs mafft

Issue - State: open - Opened by bioinformatikLabormedizinUSB over 2 years ago - 5 comments

#16 - Add stop codons

Pull Request - State: closed - Opened by mcarrara-bioinfo almost 3 years ago

#15 - Save aligned consensus

Pull Request - State: closed - Opened by mcarrara-bioinfo almost 3 years ago - 1 comment

#14 - Frameshift deletions checks

Pull Request - State: closed - Opened by DrYak over 3 years ago - 1 comment

#13 - Update ref_majority_dels with minimum count for majority base

Issue - State: open - Opened by SarahNadeau about 4 years ago - 3 comments

#12 - Update thresholds on read counts to report ambiguous bases

Pull Request - State: closed - Opened by sposadac about 4 years ago

#11 - Sort patient ids to achieve right order of columns

Pull Request - State: closed - Opened by stefanches7 over 4 years ago

#10 - False order of patient IDs in result tables

Issue - State: closed - Opened by stefanches7 over 4 years ago - 2 comments

#9 - Minor changes

Pull Request - State: closed - Opened by sposadac over 4 years ago

#8 - Pypi package

Issue - State: closed - Opened by DrYak almost 5 years ago - 1 comment

#7 - Dev

Pull Request - State: closed - Opened by sposadac almost 5 years ago

#6 - Script to reconstruct consensus sequences from an alignment file

Pull Request - State: closed - Opened by sposadac over 5 years ago

#5 - please create tag

Issue - State: closed - Opened by fizwit over 5 years ago - 1 comment

#4 - Release fixes

Pull Request - State: closed - Opened by SoapZA about 7 years ago

#3 - A License file should be added

Issue - State: closed - Opened by bgruening about 7 years ago - 1 comment

#2 - Minor changes

Pull Request - State: closed - Opened by sposadac over 7 years ago

#1 - Recent update

Pull Request - State: closed - Opened by sposadac almost 8 years ago