cbg-ethz/shorah issues and pull requests

#37 - options `-h`/`--help` should not exit with failure

Pull Request - State: closed - Opened by DrYak about 7 years ago - 5 comments

#36 - IndexError: list index out of range when running amplian.py

Issue - State: closed - Opened by nickjhathaway about 7 years ago - 4 comments

#36 - IndexError: list index out of range when running amplian.py

Issue - State: closed - Opened by nickjhathaway about 7 years ago - 4 comments

#35 - Change the mode when opening compressed files

Pull Request - State: closed - Opened by sposadac about 7 years ago - 2 comments

#35 - Change the mode when opening compressed files

Pull Request - State: closed - Opened by sposadac about 7 years ago - 2 comments

#34 - Error running Shorah.py

Issue - State: closed - Opened by woodford87 about 7 years ago - 4 comments

#34 - Error running Shorah.py

Issue - State: closed - Opened by woodford87 about 7 years ago - 4 comments

#33 - Error when running amplian.py

Issue - State: closed - Opened by nickjhathaway about 7 years ago - 2 comments

#33 - Error when running amplian.py

Issue - State: closed - Opened by nickjhathaway about 7 years ago - 2 comments

#32 - shorah.py fails if there is a . in the FASTA header name

Issue - State: closed - Opened by nickloman about 7 years ago - 5 comments
Labels: bug

#32 - shorah.py fails if there is a . in the FASTA header name

Issue - State: closed - Opened by nickloman about 7 years ago - 5 comments
Labels: bug

#31 - Porting Python 2 to Python 3

Pull Request - State: closed - Opened by sposadac over 7 years ago - 2 comments

#31 - Porting Python 2 to Python 3

Pull Request - State: closed - Opened by sposadac over 7 years ago - 2 comments

#30 - Codebase polishes

Pull Request - State: closed - Opened by SoapZA over 7 years ago

#30 - Codebase polishes

Pull Request - State: closed - Opened by SoapZA over 7 years ago

#29 - Performance improvements

Pull Request - State: closed - Opened by sposadac over 7 years ago

#29 - Performance improvements

Pull Request - State: closed - Opened by sposadac over 7 years ago

#28 - Issues with example amplicon_test

Issue - State: closed - Opened by krepsen over 7 years ago - 1 comment

#28 - Issues with example amplicon_test

Issue - State: closed - Opened by krepsen over 7 years ago - 1 comment

#27 - Bug with Shorah wrapper

Issue - State: closed - Opened by jblamyatifremer over 7 years ago - 5 comments

#26 - Modernising C/C++ Code

Issue - State: closed - Opened by SoapZA over 7 years ago - 2 comments

#26 - Modernising C/C++ Code

Issue - State: closed - Opened by SoapZA over 7 years ago - 2 comments

#25 - Fix build system and other fixes

Pull Request - State: closed - Opened by SoapZA over 7 years ago - 3 comments

#24 - Is it possible to use the error correction step of ShoRAH as a standalone process?

Issue - State: closed - Opened by greenstick almost 8 years ago - 2 comments
Labels: question

#23 - Windowsshift

Issue - State: closed - Opened by saminhf about 8 years ago - 1 comment

#22 - No such file or directory

Issue - State: closed - Opened by nelkibs over 8 years ago - 1 comment

#21 - Test ifttt recipe 2

Issue - State: closed - Opened by ozagordi over 8 years ago

#20 - Test ifttt recipe

Issue - State: closed - Opened by ozagordi over 8 years ago

#19 - Cygwin - long run time of amplian.py

Issue - State: closed - Opened by Murskautuminen over 8 years ago - 6 comments

#18 - how to run local mode

Issue - State: closed - Opened by homopolymer almost 9 years ago - 1 comment

#17 - Errors ..

Issue - State: closed - Opened by zusman almost 9 years ago - 1 comment

#16 - Error while run local or global analysis Ubuntu 14.04 64-bit

Issue - State: closed - Opened by skbrimer about 9 years ago - 16 comments

#15 - Index Error when there is a value at the index

Issue - State: closed - Opened by bbravo over 9 years ago - 1 comment

#14 - posterior fraction > 1?

Issue - State: closed - Opened by bramvrancken almost 10 years ago - 5 comments

#13 - makefile (operator?) error

Issue - State: closed - Opened by rmm257 almost 10 years ago - 4 comments

#12 - IndexError: list index out of range

Issue - State: closed - Opened by WashingtondaSilva about 10 years ago - 8 comments

#11 - ValueError: could not convert string to float: not found

Issue - State: closed - Opened by som1234 about 10 years ago - 6 comments

#10 - SNVs with either Fvar=0 or Rvar=0 should be discarded anyway

Issue - State: open - Opened by ozagordi about 10 years ago
Labels: enhancement

#9 - Frequencies in SNVs might be inconsistent

Issue - State: closed - Opened by ozagordi about 10 years ago - 1 comment
Labels: bug

#8 - samtools removed

Issue - State: closed - Opened by ozagordi about 10 years ago - 1 comment
Labels: bug, enhancement

#7 - Error in vars()

Issue - State: closed - Opened by homopolymer about 10 years ago - 8 comments
Labels: bug

#6 - Empty reads-support when there is only one haplotype

Issue - State: open - Opened by ozagordi about 10 years ago
Labels: bug

#5 - list index out of range

Issue - State: closed - Opened by ghost over 10 years ago - 8 comments

#4 - Error in analysing virus data

Issue - State: open - Opened by capemaster over 10 years ago - 10 comments
Labels: enhancement

#3 - Quote filename since this can contain funny chars

Pull Request - State: closed - Opened by georgek over 10 years ago - 1 comment

#2 - dec.py - "UnboundLocalError: local variable 'prop' referenced before assignment"

Issue - State: closed - Opened by kentwait almost 11 years ago - 1 comment

#1 - Fixing memory copy problem.

Pull Request - State: closed - Opened by holtgrewe over 11 years ago

GitHub / cbg-ethz/shorah issues and pull requests