Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / cbg-ethz/scicone issues and pull requests

#100 - test_event_prior() failed

Issue - State: closed - Opened by ljwharbers over 4 years ago - 1 comment

#100 - test_event_prior() failed

Issue - State: closed - Opened by ljwharbers over 4 years ago - 1 comment

#99 - dev

Pull Request - State: closed - Opened by pedrofale over 4 years ago

#99 - dev

Pull Request - State: closed - Opened by pedrofale over 4 years ago

#98 - Refactor: use template to support different types

Pull Request - State: closed - Opened by anilbey over 4 years ago - 1 comment

#98 - Refactor: use template to support different types

Pull Request - State: closed - Opened by anilbey over 4 years ago - 1 comment

#97 - n_bins/n_reads options not parsed

Issue - State: closed - Opened by ingenumich over 4 years ago - 6 comments

#97 - n_bins/n_reads options not parsed

Issue - State: closed - Opened by ingenumich over 4 years ago - 6 comments

#96 - Release-ready build

Pull Request - State: closed - Opened by pedrofale over 4 years ago

#96 - Release-ready build

Pull Request - State: closed - Opened by pedrofale over 4 years ago

#95 - Deal with sex chromosomes

Issue - State: closed - Opened by pedrofale almost 5 years ago - 6 comments
Labels: enhancement

#95 - Deal with sex chromosomes

Issue - State: closed - Opened by pedrofale almost 5 years ago - 6 comments
Labels: enhancement

#94 - Deal with sex chromosomes

Issue - State: closed - Opened by pedrofale almost 5 years ago

#94 - Deal with sex chromosomes

Issue - State: closed - Opened by pedrofale almost 5 years ago

#93 - Improve bps

Pull Request - State: closed - Opened by pedrofale almost 5 years ago - 1 comment

#93 - Improve bps

Pull Request - State: closed - Opened by pedrofale almost 5 years ago - 1 comment

#92 - Max search

Pull Request - State: closed - Opened by pedrofale almost 5 years ago - 1 comment

#92 - Max search

Pull Request - State: closed - Opened by pedrofale almost 5 years ago - 1 comment

#91 - Create LICENSE

Pull Request - State: closed - Opened by anilbey almost 5 years ago

#91 - Create LICENSE

Pull Request - State: closed - Opened by anilbey almost 5 years ago

#90 - Change repo name

Issue - State: closed - Opened by pedrofale almost 5 years ago - 1 comment

#90 - Change repo name

Issue - State: closed - Opened by pedrofale almost 5 years ago - 1 comment

#89 - Implement maximum likelihood search

Issue - State: closed - Opened by pedrofale almost 5 years ago - 1 comment
Labels: enhancement

#89 - Implement maximum likelihood search

Issue - State: closed - Opened by pedrofale almost 5 years ago - 1 comment
Labels: enhancement

#88 - Update breakpoint detection

Issue - State: closed - Opened by pedrofale almost 5 years ago - 1 comment
Labels: enhancement

#88 - Update breakpoint detection

Issue - State: closed - Opened by pedrofale almost 5 years ago - 1 comment
Labels: enhancement

#87 - Weighted cluster scoring

Pull Request - State: closed - Opened by pedrofale about 5 years ago

#87 - Weighted cluster scoring

Pull Request - State: closed - Opened by pedrofale about 5 years ago

#86 - Join lines

Pull Request - State: closed - Opened by pedrofale about 5 years ago

#86 - Join lines

Pull Request - State: closed - Opened by pedrofale about 5 years ago

#85 - have an example jupyter notebook

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment

#85 - have an example jupyter notebook

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment

#84 - nbd correction needs to be corrected in condense/split move

Issue - State: closed - Opened by anilbey about 5 years ago - 5 comments

#84 - nbd correction needs to be corrected in condense/split move

Issue - State: closed - Opened by anilbey about 5 years ago - 5 comments

#82 - Strange trace values format in debug

Issue - State: closed - Opened by pedrofale about 5 years ago

#82 - Strange trace values format in debug

Issue - State: closed - Opened by pedrofale about 5 years ago

#81 - Have a Tree constructor with nu

Issue - State: open - Opened by anilbey about 5 years ago
Labels: enhancement

#81 - Have a Tree constructor with nu

Issue - State: open - Opened by anilbey about 5 years ago
Labels: enhancement

#80 - simulations don't run when n_regions or n_nodes is 0

Issue - State: open - Opened by anilbey about 5 years ago
Labels: enhancement, docs

#80 - simulations don't run when n_regions or n_nodes is 0

Issue - State: open - Opened by anilbey about 5 years ago
Labels: enhancement, docs

#79 - simulating with overdispersion at bin level

Pull Request - State: closed - Opened by anilbey about 5 years ago - 1 comment

#79 - simulating with overdispersion at bin level

Pull Request - State: closed - Opened by anilbey about 5 years ago - 1 comment

#78 - Do not open the signal processing output file in append mode

Issue - State: closed - Opened by anilbey about 5 years ago

#78 - Do not open the signal processing output file in append mode

Issue - State: closed - Opened by anilbey about 5 years ago

#77 - Verbosity change

Pull Request - State: closed - Opened by anilbey about 5 years ago

#77 - Verbosity change

Pull Request - State: closed - Opened by anilbey about 5 years ago

#76 - Sim overdispersed

Pull Request - State: closed - Opened by anilbey about 5 years ago

#76 - Sim overdispersed

Pull Request - State: closed - Opened by anilbey about 5 years ago

#75 - adaptive: if score_diff is too small, don't update gamma

Pull Request - State: closed - Opened by anilbey about 5 years ago

#74 - bp_detection check if limit is reached while detecting bps #73

Pull Request - State: closed - Opened by anilbey about 5 years ago

#74 - bp_detection check if limit is reached while detecting bps #73

Pull Request - State: closed - Opened by anilbey about 5 years ago

#73 - bp detection don't add to all_node_ids if the bps limit is hit

Issue - State: closed - Opened by anilbey about 5 years ago

#73 - bp detection don't add to all_node_ids if the bps limit is hit

Issue - State: closed - Opened by anilbey about 5 years ago

#72 - Bp detect

Pull Request - State: closed - Opened by anilbey about 5 years ago

#72 - Bp detect

Pull Request - State: closed - Opened by anilbey about 5 years ago

#71 - The breakpoint indices should not be sorted

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment

#71 - The breakpoint indices should not be sorted

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment

#70 - Bp detect

Pull Request - State: closed - Opened by anilbey about 5 years ago

#70 - Bp detect

Pull Request - State: closed - Opened by anilbey about 5 years ago

#69 - simulations: make sure simulated trees are valid

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment

#69 - simulations: make sure simulated trees are valid

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment

#68 - Infer start from t

Pull Request - State: closed - Opened by anilbey about 5 years ago

#68 - Infer start from t

Pull Request - State: closed - Opened by anilbey about 5 years ago

#67 - Using segmented data

Pull Request - State: closed - Opened by anilbey about 5 years ago - 1 comment

#67 - Using segmented data

Pull Request - State: closed - Opened by anilbey about 5 years ago - 1 comment

#66 - Throw exception if no breakpoints are detected

Issue - State: closed - Opened by anilbey about 5 years ago

#66 - Throw exception if no breakpoints are detected

Issue - State: closed - Opened by anilbey about 5 years ago

#65 - Throw exceptions in moves instead of returning nullptr

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment

#65 - Throw exceptions in moves instead of returning nullptr

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment

#64 - Remove assertions in mcmc moves

Issue - State: closed - Opened by anilbey about 5 years ago

#64 - Remove assertions in mcmc moves

Issue - State: closed - Opened by anilbey about 5 years ago

#63 - do not swap two leave siblings

Issue - State: closed - Opened by anilbey about 5 years ago

#63 - do not swap two leave siblings

Issue - State: closed - Opened by anilbey about 5 years ago

#62 - delete move is deleting the node at wrong index

Issue - State: closed - Opened by anilbey about 5 years ago

#62 - delete move is deleting the node at wrong index

Issue - State: closed - Opened by anilbey about 5 years ago

#60 - removed the sibling checking functionality

Pull Request - State: closed - Opened by anilbey about 5 years ago

#60 - removed the sibling checking functionality

Pull Request - State: closed - Opened by anilbey about 5 years ago

#59 - Csv parser

Pull Request - State: closed - Opened by anilbey about 5 years ago

#58 - simulations need to write results in csvs

Issue - State: closed - Opened by anilbey about 5 years ago

#57 - add cxxparser as a submodule

Issue - State: open - Opened by anilbey about 5 years ago
Labels: enhancement

#57 - add cxxparser as a submodule

Issue - State: open - Opened by anilbey about 5 years ago
Labels: enhancement

#56 - Chi old weights

Pull Request - State: closed - Opened by anilbey about 5 years ago

#56 - Chi old weights

Pull Request - State: closed - Opened by anilbey about 5 years ago

#55 - Should n_nodes be 0 or 1 for an empty tree (with root only)?

Issue - State: closed - Opened by anilbey about 5 years ago - 3 comments
Labels: question

#54 - Genotype preserving PR violates zero ploidy changes

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment
Labels: bug

#54 - Genotype preserving PR violates zero ploidy changes

Issue - State: closed - Opened by anilbey about 5 years ago - 1 comment
Labels: bug

#53 - Bp detection refactor

Pull Request - State: closed - Opened by anilbey about 5 years ago

#53 - Bp detection refactor

Pull Request - State: closed - Opened by anilbey about 5 years ago

#52 - Refactor

Pull Request - State: closed - Opened by anilbey over 5 years ago

#52 - Refactor

Pull Request - State: closed - Opened by anilbey over 5 years ago

#51 - #50 restore changes on t_prime upon rejection (multiple runs)

Pull Request - State: closed - Opened by anilbey over 5 years ago

#51 - #50 restore changes on t_prime upon rejection (multiple runs)

Pull Request - State: closed - Opened by anilbey over 5 years ago

#50 - [BUG] Condense/split move sometimes mutates the tree when the move is rejected

Issue - State: closed - Opened by anilbey over 5 years ago - 1 comment
Labels: bug

#50 - [BUG] Condense/split move sometimes mutates the tree when the move is rejected

Issue - State: closed - Opened by anilbey over 5 years ago - 1 comment
Labels: bug

#49 - Valid proposed tree ratio is creating a bias on move proposals

Issue - State: closed - Opened by anilbey over 5 years ago - 2 comments

#49 - Valid proposed tree ratio is creating a bias on move proposals

Issue - State: closed - Opened by anilbey over 5 years ago - 2 comments