cbg-ethz/pmhn issues and pull requests

#31 - Simulation files

Pull Request - State: closed - Opened by laurenzkeller 12 months ago

#31 - Simulation files

Pull Request - State: closed - Opened by laurenzkeller 12 months ago

#30 - JAX backend of TreeMHN

Pull Request - State: open - Opened by pawel-czyz 12 months ago - 1 comment
Labels: :steam_locomotive: enhancement, :shirt: effort M

#30 - JAX backend of TreeMHN

Pull Request - State: open - Opened by pawel-czyz 12 months ago - 1 comment
Labels: :steam_locomotive: enhancement, :shirt: effort M

#29 - Optimized likelihood

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 1 comment

#29 - Optimized likelihood

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 1 comment

#28 - Add more priors encouraging sparsity

Pull Request - State: closed - Opened by pawel-czyz about 1 year ago
Labels: :steam_locomotive: enhancement, :shirt: effort M, :wrench: refactor

#28 - Add more priors encouraging sparsity

Pull Request - State: closed - Opened by pawel-czyz about 1 year ago
Labels: :steam_locomotive: enhancement, :shirt: effort M, :wrench: refactor

#27 - parallel code for likelihood

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago

#27 - parallel code for likelihood

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago

#26 - modified _simulate_trees function such that it returns a single node instead of a dictionary

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 2 comments

#26 - modified _simulate_trees function such that it returns a single node instead of a dictionary

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 2 comments

#25 - A prototype of Bayesian inference for TreeMHN

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 3 comments

#25 - A prototype of Bayesian inference for TreeMHN

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 3 comments

#24 - Apply formatter

Pull Request - State: closed - Opened by pawel-czyz about 1 year ago

#24 - Apply formatter

Pull Request - State: closed - Opened by pawel-czyz about 1 year ago

#23 - Bayes

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 4 comments

#23 - Bayes

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 4 comments

#22 - Optimized implementation of the likelihood

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 4 comments

#22 - Optimized implementation of the likelihood

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 4 comments

#21 - Likelihood

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 9 comments

#21 - Likelihood

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 9 comments

#20 - Tree simulation

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 1 comment

#20 - Tree simulation

Pull Request - State: closed - Opened by laurenzkeller about 1 year ago - 1 comment

#19 - Add utilities for parsing trees

Pull Request - State: closed - Opened by pawel-czyz about 1 year ago - 2 comments
Labels: :steam_locomotive: enhancement

#19 - Add utilities for parsing trees

Pull Request - State: closed - Opened by pawel-czyz about 1 year ago - 2 comments
Labels: :steam_locomotive: enhancement

#18 - TreeMHN: implement gradient of the loglikelihood

Issue - State: open - Opened by pawel-czyz over 1 year ago
Labels: :steam_locomotive: enhancement, :exclamation: low priority

#18 - TreeMHN: implement gradient of the loglikelihood

Issue - State: open - Opened by pawel-czyz over 1 year ago
Labels: :steam_locomotive: enhancement, :exclamation: low priority

#17 - Implement tree validation

Issue - State: open - Opened by pawel-czyz over 1 year ago
Labels: :steam_locomotive: enhancement, :exclamation: medium priority

#17 - Implement tree validation

Issue - State: open - Opened by pawel-czyz over 1 year ago
Labels: :steam_locomotive: enhancement, :exclamation: medium priority

#16 - Add subpackage with template for TreeMHN

Pull Request - State: closed - Opened by pawel-czyz over 1 year ago - 1 comment

#16 - Add subpackage with template for TreeMHN

Pull Request - State: closed - Opened by pawel-czyz over 1 year ago - 1 comment

#15 - Implement TreeMHN likelihood

Issue - State: open - Opened by pawel-czyz over 1 year ago
Labels: :steam_locomotive: enhancement, :exclamation: high priority

#15 - Implement TreeMHN likelihood

Issue - State: open - Opened by pawel-czyz over 1 year ago
Labels: :steam_locomotive: enhancement, :exclamation: high priority

#14 - Implement tree simulator

Issue - State: closed - Opened by pawel-czyz over 1 year ago
Labels: :steam_locomotive: enhancement, :exclamation: high priority

#14 - Implement tree simulator

Issue - State: closed - Opened by pawel-czyz over 1 year ago
Labels: :steam_locomotive: enhancement, :exclamation: high priority