Ecosyste.ms: Issues

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GitHub / cbcrg/pergola issues and pull requests

#26 - Add argument version to main pergola script

Issue - State: closed - Opened by JoseEspinosa over 5 years ago - 1 comment
Labels: enhancement

#25 - Uncouple mapping file format recognition from comments

Issue - State: closed - Opened by JoseEspinosa over 5 years ago
Labels: bug

#24 - Create Conda package

Issue - State: open - Opened by JoseEspinosa about 6 years ago
Labels: enhancement, pri/high

#23 - switch from chrom to phase term in the ontology

Issue - State: open - Opened by JoseEspinosa over 6 years ago
Labels: enhancement, pri/low, doc

#22 - cytoband shift for `pergola_rules`

Issue - State: closed - Opened by ionase over 6 years ago - 1 comment
Labels: enhancement, pri/mid

#21 - Include version in pergola main script ``pergola_rules``

Issue - State: closed - Opened by JoseEspinosa over 6 years ago - 1 comment
Labels: enhancement, pri/low

#20 - Multiple files processing naming

Issue - State: closed - Opened by JoseEspinosa over 6 years ago - 1 comment
Labels: bug, pri/high

#19 - Change naming of some options of `pergola_rules.py`

Issue - State: closed - Opened by JoseEspinosa over 6 years ago
Labels: enhancement, pri/low

#18 - Migrate documentation to read the docs

Issue - State: open - Opened by JoseEspinosa over 6 years ago
Labels: enhancement, question, pri/mid, doc

#17 - Option --phases breaks back compatibility

Issue - State: closed - Opened by JoseEspinosa over 6 years ago
Labels: bug, pri/high

#16 - Option --genome breaks back compatibility

Issue - State: closed - Opened by JoseEspinosa over 6 years ago
Labels: bug, pri/high

#15 - end time set by window creation can be greater than maximum value in original data

Issue - State: closed - Opened by JoseEspinosa over 6 years ago - 1 comment
Labels: bug, pri/high

#14 - Porting code to python 3

Issue - State: closed - Opened by JoseEspinosa over 6 years ago - 1 comment
Labels: enhancement

#13 - Add support for wig files

Issue - State: open - Opened by JoseEspinosa over 6 years ago
Labels: enhancement, pri/low

#12 - Option to set maximum value for `chrom.sizes` creation

Issue - State: closed - Opened by JoseEspinosa over 6 years ago
Labels: enhancement, pri/low

#11 - Tracks without values after minimum and maximun filtering breaks execution

Issue - State: closed - Opened by JoseEspinosa over 6 years ago
Labels: bug, pri/high

#10 - minimum can not be greater than maximum when`FASTA` is created

Issue - State: closed - Opened by JoseEspinosa over 6 years ago
Labels: bug, pri/mid

#9 - Create option "-g --genome" for pergola_rules

Issue - State: closed - Opened by JoseEspinosa over 6 years ago
Labels: enhancement

#8 - number of mappings bigger than fields in input

Issue - State: closed - Opened by JoseEspinosa over 6 years ago
Labels: enhancement

#7 - min max interval

Issue - State: closed - Opened by JoseEspinosa over 6 years ago
Labels: enhancement

#6 - Phases file option

Issue - State: closed - Opened by JoseEspinosa almost 7 years ago
Labels: enhancement

#5 - pergola_isatab fails to download files from URL

Issue - State: closed - Opened by JoseEspinosa almost 7 years ago
Labels: bug

#4 - Support excel files as input

Issue - State: closed - Opened by JoseEspinosa almost 7 years ago - 1 comment
Labels: enhancement

#3 - Allow ordinal selection of the columns of a headless CSV input file for the mapping

Issue - State: closed - Opened by JoseEspinosa almost 7 years ago - 2 comments
Labels: enhancement

#2 - chrom.sizes maximum value error

Issue - State: closed - Opened by JoseEspinosa over 7 years ago
Labels: bug

#1 - Pergola snapshots

Issue - State: open - Opened by JoseEspinosa almost 9 years ago