carpentries-incubator/sdc-bids-dmri issues and pull requests

#101 - Generate and add figures to the deterministic tracking episode

Issue - State: closed - Opened by jhlegarreta almost 4 years ago
Labels: type:enhancement

#101 - Generate and add figures to the deterministic tracking episode

Issue - State: closed - Opened by jhlegarreta almost 4 years ago
Labels: type:enhancement

#100 - Add exercise statements and solutions notebooks

Issue - State: open - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: status:in progress, type:enhancement

#100 - Add exercise statements and solutions notebooks

Issue - State: open - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: status:in progress, type:enhancement

#99 - FIX: Fix broken paths in intro notebook

Pull Request - State: closed - Opened by josephmje almost 4 years ago - 1 comment

#99 - FIX: Fix broken paths in intro notebook

Pull Request - State: closed - Opened by josephmje almost 4 years ago - 1 comment

#98 - ENH: Constrain the slices to be shown to three dimensions

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:enhancement

#98 - ENH: Constrain the slices to be shown to three dimensions

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:enhancement

#97 - ENH: Add coronal and sagittal views to GFA plot

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 3 comments
Labels: type:enhancement

#97 - ENH: Add coronal and sagittal views to GFA plot

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 3 comments
Labels: type:enhancement

#96 - ENH: Fix GitHub actions notebook test workflow

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 5 comments
Labels: type:enhancement

#96 - ENH: Fix GitHub actions notebook test workflow

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 5 comments
Labels: type:enhancement

#95 - STYLE: Comply with PEP 8

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:formatting

#95 - STYLE: Comply with PEP 8

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:formatting

#94 - BUG: Fix deterministic tractography notebook

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 4 comments
Labels: type:bug

#94 - BUG: Fix deterministic tractography notebook

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 4 comments
Labels: type:bug

#93 - FIX: Update Binder link

Issue - State: closed - Opened by josephmje almost 4 years ago - 4 comments

#93 - FIX: Update Binder link

Issue - State: closed - Opened by josephmje almost 4 years ago - 4 comments

#92 - ENH: Reuse the anatomical orientation views generating method

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 4 comments
Labels: type:enhancement

#92 - ENH: Reuse the anatomical orientation views generating method

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 4 comments
Labels: type:enhancement

#91 - BUG: Use the right bvec file in prob tractography episode

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:bug

#91 - BUG: Use the right bvec file in prob tractography episode

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:bug

#90 - BUG: Fix probabilistic tractography notebook

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 5 comments
Labels: type:bug

#90 - BUG: Fix probabilistic tractography notebook

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 5 comments
Labels: type:bug

#89 - STYLE: Change tabs to whitespaces

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:formatting

#89 - STYLE: Change tabs to whitespaces

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:formatting

#88 - BUG: Github Actions Cache

Issue - State: closed - Opened by kaitj almost 4 years ago - 2 comments

#88 - BUG: Github Actions Cache

Issue - State: closed - Opened by kaitj almost 4 years ago - 2 comments

#87 - BUG: Add missing base path include

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:bug

#86 - include base_path.html for relative_root_path

Pull Request - State: closed - Opened by tobyhodges almost 4 years ago - 4 comments

#86 - include base_path.html for relative_root_path

Pull Request - State: closed - Opened by tobyhodges almost 4 years ago - 4 comments

#85 - Automatically generate the Markdown episodes from the Jupyter Notebooks?

Issue - State: open - Opened by jhlegarreta almost 4 years ago - 3 comments
Labels: type:template and tools, type:enhancement

#85 - Automatically generate the Markdown episodes from the Jupyter Notebooks?

Issue - State: open - Opened by jhlegarreta almost 4 years ago - 3 comments
Labels: type:template and tools, type:enhancement

#84 - FIX: Update image display in DTI lesson

Pull Request - State: closed - Opened by josephmje almost 4 years ago - 7 comments

#84 - FIX: Update image display in DTI lesson

Pull Request - State: closed - Opened by josephmje almost 4 years ago - 7 comments

#83 - Use the `{{ relative_root_path }}` placeholder to resolve figure paths in notebooks

Issue - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:enhancement

#83 - Use the `{{ relative_root_path }}` placeholder to resolve figure paths in notebooks

Issue - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:enhancement

#82 - ENH: Add orientation concepts figure

Pull Request - State: closed - Opened by kaitj almost 4 years ago - 3 comments

#82 - ENH: Add orientation concepts figure

Pull Request - State: closed - Opened by kaitj almost 4 years ago - 3 comments

#81 - Add a figure to the camera setup discussion

Issue - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:discussion

#81 - Add a figure to the camera setup discussion

Issue - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:discussion

#80 - DOC: Improve the completeness of tractography method list

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:enhancement

#80 - DOC: Improve the completeness of tractography method list

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:enhancement

#79 - DOC: Add further aspects of dMRI to discussion

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 3 comments
Labels: type:discussion

#79 - DOC: Add further aspects of dMRI to discussion

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 3 comments
Labels: type:discussion

#78 - Fix `{:class=”img-responsive”}` tags

Issue - State: closed - Opened by jhlegarreta almost 4 years ago
Labels: type:formatting

#78 - Fix `{:class=”img-responsive”}` tags

Issue - State: closed - Opened by jhlegarreta almost 4 years ago
Labels: type:formatting

#77 - DOC: Add discussion section about camera setup

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 5 comments
Labels: type:discussion

#77 - DOC: Add discussion section about camera setup

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 5 comments
Labels: type:discussion

#76 - ENH: Put the `fury` camera setup into a function

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:enhancement

#76 - ENH: Put the `fury` camera setup into a function

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:enhancement

#75 - BUG: Mark output cell as Markdown in CSD episode

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:bug

#75 - BUG: Mark output cell as Markdown in CSD episode

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:bug

#74 - DOC: Declare no reported problems in instructor notes

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:instructor guide

#74 - DOC: Declare no reported problems in instructor notes

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:instructor guide

#73 - STY: Sync template and update Makefile/Gemfile

Pull Request - State: closed - Opened by josephmje almost 4 years ago - 5 comments

#73 - STY: Sync template and update Makefile/Gemfile

Pull Request - State: closed - Opened by josephmje almost 4 years ago - 5 comments

#72 - DOC: Add meaningful figure captions

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:enhancement

#72 - DOC: Add meaningful figure captions

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 1 comment
Labels: type:enhancement

#71 - STYLE: Prefer `{{ relative_root_path }}` to resolve figure paths

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 6 comments
Labels: type:template and tools

#71 - STYLE: Prefer `{{ relative_root_path }}` to resolve figure paths

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 6 comments
Labels: type:template and tools

#70 - DOC: Fix typo in citation author name

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:typo text

#70 - DOC: Fix typo in citation author name

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 2 comments
Labels: type:typo text

#69 - ENH: Add different orientations to CSD Episode

Pull Request - State: closed - Opened by kaitj almost 4 years ago - 8 comments
Labels: type:enhancement

#69 - ENH: Add different orientations to CSD Episode

Pull Request - State: closed - Opened by kaitj almost 4 years ago - 8 comments
Labels: type:enhancement

#68 - Manual episode order for Figures

Pull Request - State: closed - Opened by tobyhodges almost 4 years ago - 6 comments

#68 - Manual episode order for Figures

Pull Request - State: closed - Opened by tobyhodges almost 4 years ago - 6 comments

#67 - STYLE: Use the episode order feature

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 10 comments
Labels: type:formatting

#67 - STYLE: Use the episode order feature

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 10 comments
Labels: type:formatting

#66 - Change string substitutions for f-strings

Issue - State: closed - Opened by jhlegarreta almost 4 years ago
Labels: help wanted, good first issue, type:formatting

#66 - Change string substitutions for f-strings

Issue - State: closed - Opened by jhlegarreta almost 4 years ago
Labels: help wanted, good first issue, type:formatting

#65 - MAINT: Update exercise solution

Pull Request - State: closed - Opened by kaitj almost 4 years ago - 1 comment

#65 - MAINT: Update exercise solution

Pull Request - State: closed - Opened by kaitj almost 4 years ago - 1 comment

#64 - MAINT: Update dti episode image and dataset

Pull Request - State: closed - Opened by kaitj almost 4 years ago - 1 comment

#63 - BUG: OSF ds000221 eddy missing subjects

Issue - State: closed - Opened by kaitj almost 4 years ago - 1 comment

#63 - BUG: OSF ds000221 eddy missing subjects

Issue - State: closed - Opened by kaitj almost 4 years ago - 1 comment

#62 - DOC: Improve syntax in prob tracking episode callout

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 5 comments
Labels: type:formatting

#62 - DOC: Improve syntax in prob tracking episode callout

Pull Request - State: closed - Opened by jhlegarreta almost 4 years ago - 5 comments
Labels: type:formatting

#61 - Improve rendering/syntax of note in probabilistic tractography episode

Issue - State: closed - Opened by jhlegarreta almost 4 years ago
Labels: type:formatting

#60 - ENH: Remove unnecessary content from the CSD episode

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago
Labels: type:enhancement

#60 - ENH: Remove unnecessary content from the CSD episode

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago
Labels: type:enhancement

#59 - ENH: Refactor tractography episodes

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago - 6 comments
Labels: type:enhancement

#59 - ENH: Refactor tractography episodes

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago - 6 comments
Labels: type:enhancement

#58 - DOC: Remove redundant instructor notes title

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago
Labels: type:instructor guide

#57 - BUG: Fix setup instructions file syntax

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago - 1 comment
Labels: type:bug

#57 - BUG: Fix setup instructions file syntax

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago - 1 comment
Labels: type:bug

#56 - BUG: Fix `links.md` file comment tag syntax

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago - 1 comment
Labels: type:bug

#56 - BUG: Fix `links.md` file comment tag syntax

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago - 1 comment
Labels: type:bug

#55 - BUG: Remove the unnecessary code environment for the glossary terms

Pull Request - State: closed - Opened by jhlegarreta about 4 years ago - 2 comments