cangermueller/deepcpg issues and pull requests

#43 - pip install deepcpg does not install tensorflow.

Issue - State: open - Opened by shawarden over 1 year ago

#42 - pip install deepcpg => bad interpreter: /anaconda3/envs/deepcpg/bin/python: no such file or directory

Issue - State: open - Opened by shawarden over 1 year ago

#41 - Negative strand index input

Issue - State: open - Opened by yxwucq almost 2 years ago

#40 - Recommendations for using in Tumor Normal scenario

Issue - State: open - Opened by harish0201 about 2 years ago

#39 - Can't calculate the pair potential

Issue - State: open - Opened by 1920993165 about 3 years ago

#38 - keras/tensorflow version incompatibility

Issue - State: open - Opened by sameelab about 3 years ago

#37 - keras / tensorflow version compatibility

Issue - State: open - Opened by rekham1077 about 4 years ago - 2 comments

#36 - Fails CpG module training

Issue - State: open - Opened by yoramzarai about 4 years ago

#35 - Problem with setup.sh when downloading cpg data

Issue - State: closed - Opened by yoramzarai about 4 years ago - 1 comment

#34 - Download links for example data broken

Issue - State: closed - Opened by Mr-Pepe about 4 years ago

#33 - CpG sites in the negative strand

Issue - State: open - Opened by yasin-chop almost 5 years ago - 3 comments

#32 - Error in train.sh

Issue - State: closed - Opened by yasin-chop almost 5 years ago - 1 comment

#31 - Example data not accessible

Issue - State: closed - Opened by yasin-chop almost 5 years ago - 1 comment

#30 - Models in the zoo are not accessible

Issue - State: open - Opened by yasin-chop almost 5 years ago

#29 - impute CpG values for gene by cell matrix

Issue - State: open - Opened by shengyongniu almost 5 years ago - 1 comment

#28 - Unable to train joint model from pretrained cpg and dna model with tensorflow backend

Issue - State: open - Opened by snajder-r almost 5 years ago - 1 comment

#27 - GPU utility in training only about 25%

Issue - State: open - Opened by snajder-r almost 5 years ago - 1 comment

#26 - This software can only predict the methylation status not the exact methylation level right

Issue - State: open - Opened by sixone11 almost 5 years ago

#25 - Can you provide pre-trained models from the DeepCpG model zoo

Issue - State: open - Opened by Chamemee over 5 years ago

#24 - CpG profiles file not found

Issue - State: open - Opened by pegahmavaee over 5 years ago - 4 comments

#23 - PCA of learnt motifs by DeepCpG

Issue - State: open - Opened by janewangsmile over 5 years ago

#22 - erros and warnings

Issue - State: closed - Opened by PoisonAlien over 5 years ago - 5 comments

#21 - Error in dcpg_train.py

Issue - State: closed - Opened by timpeters82 almost 6 years ago - 3 comments

#20 - Error in execution of File fine_tune/index.ipynb

Issue - State: closed - Opened by Abhishek019 about 6 years ago - 1 comment

#19 - Update setup.sh

Pull Request - State: closed - Opened by mina7928 about 6 years ago

#18 - Cannot open the deep_cpg/notebooks/basics/index.ipynb

Issue - State: closed - Opened by JieYang031 over 6 years ago - 1 comment

#17 - No access to ./data/anno.zip on the server

Issue - State: closed - Opened by JieYang031 over 6 years ago - 1 comment

#16 - Error filter

Issue - State: closed - Opened by frankmarab over 6 years ago - 5 comments

#15 - AttributeError: 'list' object has no attribute 'get_shape' when building model

Issue - State: closed - Opened by ajsteele over 6 years ago - 1 comment

#14 - Keras/Tensorflow combatible versions

Issue - State: closed - Opened by eathieniti over 6 years ago - 2 comments

#13 - ValueError: If printing histograms, validation_data must be provided, and cannot be a generator.

Issue - State: closed - Opened by AgentLjc over 6 years ago - 11 comments

#12 - Fine tuning joint model doesn't seem to work.

Issue - State: closed - Opened by Bonder-MJ almost 7 years ago - 2 comments