campbio/musicatk issues and pull requests

#64 - plotting bug fixes

Pull Request - State: open - Opened by nqgurevich 7 months ago

#63 - Add question markers in every pages

Pull Request - State: closed - Opened by Gtnick1241 8 months ago

#62 - UI update and fixed TCGA import problem

Pull Request - State: closed - Opened by Gtnick1241 9 months ago

#61 - plot_sample_counts updates

Pull Request - State: closed - Opened by nqgurevich about 1 year ago

#60 - Update readme

Pull Request - State: closed - Opened by achevali over 1 year ago - 2 comments

#59 - Update R-CMD-check.yaml

Pull Request - State: closed - Opened by achevali over 1 year ago

#58 - Is It Possible To Have Connections Between Samples in UMAPs

Issue - State: closed - Opened by kevlumbus over 1 year ago - 2 comments

#57 - add code to sig_compare function to find best match

Pull Request - State: closed - Opened by Gtnick1241 over 1 year ago - 2 comments

#56 - Devel

Pull Request - State: closed - Opened by Gtnick1241 over 1 year ago

#55 - Re-styling of signature plots.

Pull Request - State: closed - Opened by nqgurevich over 1 year ago

#54 - discovery_prediction check

Pull Request - State: closed - Opened by nqgurevich almost 2 years ago

#53 - No colors in DBS plot from compare_cosmic_v3()

Issue - State: closed - Opened by kgeyer about 2 years ago

#52 - musicatk::create_musica() from a data frame leads to only NN as variant alleles

Issue - State: open - Opened by ThomasGro over 2 years ago - 4 comments

#51 - Is there any way to get evidence that a DBS is actually 2 SBS? What are the relative rates?

Issue - State: closed - Opened by achevali about 3 years ago - 3 comments
Labels: question

#49 - Is there any way to get evidence that a DBS is actually 2 SBS? What are the relative rates?

Issue - State: closed - Opened by achevali about 3 years ago
Labels: question

#48 - subset_variants_by_samples should use %in% instead of ==

Issue - State: open - Opened by achevali about 3 years ago
Labels: bug

#47 - Signature Etiology Lookup Table

Issue - State: open - Opened by achevali about 3 years ago - 1 comment
Labels: enhancement

#46 - Shiny

Pull Request - State: closed - Opened by nathansahelijo about 3 years ago

#45 - Shiny

Pull Request - State: closed - Opened by nathansahelijo over 3 years ago

#44 - Change covr travis install

Pull Request - State: closed - Opened by nathansahelijo over 3 years ago

#43 - Shiny

Pull Request - State: closed - Opened by nathansahelijo over 3 years ago - 1 comment

#42 - Shiny

Pull Request - State: closed - Opened by nathansahelijo over 3 years ago

#41 - Encoding issue in plot_ functions

Issue - State: closed - Opened by Acare over 3 years ago - 1 comment

#40 - Lex sort umap

Pull Request - State: closed - Opened by achevali over 3 years ago

#39 - Indel optim

Pull Request - State: closed - Opened by achevali over 3 years ago

#38 - Simple File Format

Issue - State: open - Opened by nathansahelijo over 3 years ago
Labels: enhancement

#37 - Final fixes

Pull Request - State: closed - Opened by achevali over 3 years ago

#36 - Rshiny

Pull Request - State: closed - Opened by BioTong almost 4 years ago

#35 - SBS192 Create Table Inconsistencies

Issue - State: closed - Opened by nathansahelijo almost 4 years ago - 1 comment
Labels: bug

#34 - Cluster exposure warns of non-convergence

Issue - State: open - Opened by achevali almost 4 years ago
Labels: help wanted, question

#33 - Final fixes

Pull Request - State: closed - Opened by achevali almost 4 years ago

#32 - Overwrite Table Not Working Correctly

Issue - State: closed - Opened by nathansahelijo almost 4 years ago - 3 comments
Labels: bug

#31 - bumped version number for Bioconductor and updated news

Pull Request - State: closed - Opened by achevali almost 4 years ago

#30 - Issue plotting cluster in umap

Issue - State: closed - Opened by achevali almost 4 years ago
Labels: bug

#29 - Indel building

Pull Request - State: closed - Opened by achevali almost 4 years ago

#28 - Combine dbs in create_musica ends up combining Indels

Issue - State: closed - Opened by achevali almost 4 years ago - 1 comment
Labels: bug, low_priority

#27 - fixed indel plotting, updated heatmap

Pull Request - State: closed - Opened by achevali almost 4 years ago

#26 - Parallel Process prediction/discovery gridding

Issue - State: open - Opened by achevali almost 4 years ago
Labels: enhancement

#25 - Upgrade indel plotting

Issue - State: open - Opened by achevali almost 4 years ago
Labels: enhancement

#24 - More clustering

Pull Request - State: closed - Opened by BioTong almost 4 years ago

#23 - Properly sort umap signature name order

Issue - State: closed - Opened by achevali almost 4 years ago - 1 comment
Labels: bug

#22 - Clustering

Pull Request - State: closed - Opened by BioTong almost 4 years ago

#21 - Post release changes

Pull Request - State: closed - Opened by achevali almost 4 years ago

#20 - exposure_differential_analysis

Pull Request - State: closed - Opened by nathansahelijo almost 4 years ago

#19 - Add per-variant signature probability

Issue - State: closed - Opened by achevali almost 4 years ago - 1 comment
Labels: enhancement

#18 - Calculate signature probability for each individual variant

Issue - State: closed - Opened by joshua-d-campbell almost 4 years ago - 1 comment

#17 - Message when using non-standard table names

Issue - State: open - Opened by joshua-d-campbell about 4 years ago
Labels: quality

#16 - Heatmap

Pull Request - State: closed - Opened by zeenu94 about 4 years ago