campaslab/napari-stress issues and pull requests

#384 - added section on relationship between ellipsoid and stress

Pull Request - State: closed - Opened by jo-mueller 4 months ago
Labels: documentation

#383 - made processing layerdatatuples more independent from numpy

Pull Request - State: closed - Opened by jo-mueller 4 months ago

#382 - Use `napari-timelapse-processor` instead of internal `frame_by_frame`

Issue - State: open - Opened by jo-mueller 4 months ago
Labels: enhancement

#381 - Clarify documentation

Pull Request - State: open - Opened by jo-mueller 4 months ago

#380 - added `translate` parameter to processed samples

Pull Request - State: closed - Opened by jo-mueller 4 months ago
Labels: enhancement

#379 - Glossary add-on

Issue - State: open - Opened by jo-mueller 4 months ago - 1 comment
Labels: documentation

#378 - Set `translate`

Issue - State: closed - Opened by jo-mueller 4 months ago
Labels: enhancement

#377 - Clarify documentation

Issue - State: open - Opened by jo-mueller 4 months ago
Labels: documentation

#376 - Remove pyshtools

Pull Request - State: closed - Opened by jo-mueller 5 months ago
Labels: enhancement

#375 - Replace pygeodesics

Pull Request - State: open - Opened by jo-mueller 5 months ago
Labels: enhancement

#374 - Rewrite spherical harmonics as class

Pull Request - State: closed - Opened by jo-mueller 5 months ago
Labels: enhancement

#373 - added check to ensure that active dask client exists

Pull Request - State: closed - Opened by jo-mueller 5 months ago
Labels: bug

#372 - Parallelization doesn't work

Issue - State: closed - Opened by jo-mueller 5 months ago

#371 - Added binary fill to surface labelled droplet reconstruction

Pull Request - State: closed - Opened by jo-mueller 6 months ago - 1 comment
Labels: bug, documentation

#370 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: open - Opened by pre-commit-ci[bot] 7 months ago - 1 comment

#369 - fixed bug and reran notebook

Pull Request - State: closed - Opened by jo-mueller 7 months ago
Labels: documentation

#368 - constrain scipy version

Pull Request - State: closed - Opened by jo-mueller 8 months ago
Labels: bug

#367 - used abstract base classspecifics

Pull Request - State: closed - Opened by jo-mueller 8 months ago
Labels: enhancement

#366 - Error if reconstruction interpolation set to cubic

Issue - State: closed - Opened by jo-mueller 8 months ago - 21 comments

#365 - add bokeh to deps

Pull Request - State: closed - Opened by jo-mueller 8 months ago
Labels: enhancement

#364 - added some additional installation instructions and moved them to FAQ

Pull Request - State: closed - Opened by jo-mueller 8 months ago
Labels: documentation

#363 - added stress results to docs

Pull Request - State: closed - Opened by jo-mueller 8 months ago - 1 comment
Labels: documentation

#362 - Fix vedo api in test

Pull Request - State: closed - Opened by jo-mueller 8 months ago
Labels: bug

#361 - Change refinement toolbox presets

Pull Request - State: closed - Opened by jo-mueller 8 months ago

#360 - No data plotted :(

Issue - State: open - Opened by elena-scarpa 8 months ago - 2 comments

#359 - Apply fix in ellipsoid orientation to validation

Pull Request - State: closed - Opened by jo-mueller 10 months ago - 1 comment
Labels: documentation

#358 - Introduce `EllipseExpander` class

Pull Request - State: closed - Opened by jo-mueller 10 months ago - 1 comment

#357 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 10 months ago - 1 comment

#356 - added scale to sample data

Pull Request - State: closed - Opened by jo-mueller 11 months ago
Labels: enhancement

#355 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 1 comment

#354 - added docstring to ``frame_by_frame`

Pull Request - State: closed - Opened by jo-mueller 11 months ago
Labels: documentation

#353 - Support pandas dataframes in `frame_by_frame`

Pull Request - State: closed - Opened by jo-mueller 11 months ago - 1 comment

#352 - Measuring intensities on rescaled images

Issue - State: open - Opened by maleehahassan 11 months ago - 1 comment

#351 - Scale resampling length

Pull Request - State: open - Opened by jo-mueller 11 months ago - 1 comment
Labels: enhancement

#350 - Fix logging of timelapse data

Pull Request - State: closed - Opened by jo-mueller 11 months ago - 1 comment
Labels: documentation

#349 - Demo Analyze Everything Hung Up on Reconstruction

Issue - State: closed - Opened by carlos-gomez00 11 months ago - 8 comments

#348 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 11 months ago - 1 comment

#347 - Fix api documentation

Pull Request - State: closed - Opened by jo-mueller 12 months ago - 1 comment
Labels: documentation

#346 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] 12 months ago - 1 comment

#345 - Bump version from `init.py`

Pull Request - State: closed - Opened by jo-mueller 12 months ago - 1 comment
Labels: release

#344 - Make patch fitted curvature public

Pull Request - State: closed - Opened by jo-mueller 12 months ago - 1 comment
Labels: enhancement

#343 - Make patch-fitted curvature measurement function public

Issue - State: closed - Opened by jo-mueller 12 months ago

#342 - Parallelize geodesic distances

Pull Request - State: closed - Opened by jo-mueller 12 months ago - 1 comment
Labels: enhancement

#341 - Fix vedo version

Pull Request - State: closed - Opened by jo-mueller almost 1 year ago - 1 comment
Labels: bug

#340 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago

#339 - Add validation notebook

Pull Request - State: closed - Opened by jo-mueller about 1 year ago - 1 comment

#338 - Validation

Issue - State: closed - Opened by jo-mueller about 1 year ago
Labels: documentation

#337 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#336 - Support pandas dataframe for frame by frame

Issue - State: closed - Opened by ArBoutillon about 1 year ago

#335 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#334 - Code style cleanup

Pull Request - State: closed - Opened by jo-mueller about 1 year ago - 1 comment

#333 - don't return rescaled image

Pull Request - State: closed - Opened by jo-mueller about 1 year ago - 1 comment
Labels: enhancement

#332 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 1 year ago - 1 comment

#331 - dependency cleanup

Pull Request - State: open - Opened by jo-mueller about 1 year ago - 1 comment

#330 - Replace pointcloud visualization with napari matplotlib

Pull Request - State: closed - Opened by jo-mueller about 1 year ago - 1 comment
Labels: documentation

#329 - removed cle

Pull Request - State: closed - Opened by jo-mueller about 1 year ago - 4 comments
Labels: bug

#328 - added tests and support for LayerDataTuple 4D unstacking

Pull Request - State: closed - Opened by jo-mueller about 1 year ago - 1 comment

#327 - Create plots from toolboxes

Pull Request - State: closed - Opened by jo-mueller about 1 year ago - 1 comment
Labels: enhancement

#326 - replaced automodule by autosummary

Pull Request - State: closed - Opened by jo-mueller about 1 year ago

#325 - changed installation instruction for jupter book build

Pull Request - State: closed - Opened by jo-mueller about 1 year ago

#324 - update jupyter book build workflow to newer versions

Pull Request - State: closed - Opened by jo-mueller about 1 year ago

#323 - added napari-stress to deps used for docs

Pull Request - State: closed - Opened by jo-mueller about 1 year ago
Labels: documentation

#322 - changed build call

Pull Request - State: closed - Opened by jo-mueller about 1 year ago

#321 - Fix api docs

Pull Request - State: closed - Opened by jo-mueller about 1 year ago
Labels: documentation

#320 - Fix api docs

Pull Request - State: closed - Opened by jo-mueller about 1 year ago
Labels: documentation

#319 - added template for PRs

Pull Request - State: closed - Opened by jo-mueller over 1 year ago
Labels: documentation

#318 - bumped version

Pull Request - State: closed - Opened by jo-mueller over 1 year ago
Labels: release

#317 - Feedback on reconstruction quality confocal vs spinning disc imaging

Issue - State: open - Opened by elena-scarpa over 1 year ago - 9 comments

#316 - 'FeaturesHistogramWidget' object has no attribute 'x_axis_key'

Issue - State: closed - Opened by elena-scarpa over 1 year ago - 5 comments

#315 - Sort vectors

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment

#314 - Save and load settings

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment

#313 - Re use client on multiple runs

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment
Labels: enhancement

#312 - Remove pyclesperanto

Issue - State: closed - Opened by jo-mueller over 1 year ago

#311 - Improve analyze everything

Pull Request - State: closed - Opened by jo-mueller over 1 year ago

#310 - Add length multiplier to normals

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment

#309 - Revert "replaced pygeodesics by vedo and pyFM"

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment

#308 - replaced pygeodesics by vedo and pyFM

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment
Labels: enhancement

#307 - removed numpy pin

Pull Request - State: open - Opened by jo-mueller over 1 year ago

#306 - Add more decimals

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment
Labels: enhancement

#305 - bumped version

Pull Request - State: closed - Opened by jo-mueller over 1 year ago
Labels: release

#304 - Add more decimal numbers to toolbox

Issue - State: closed - Opened by jo-mueller over 1 year ago - 1 comment

#303 - Remove numpy pin

Issue - State: open - Opened by jo-mueller over 1 year ago

#302 - fixed vedo syntax

Pull Request - State: closed - Opened by jo-mueller over 1 year ago

#301 - added some download hints

Pull Request - State: closed - Opened by jo-mueller over 1 year ago
Labels: documentation

#300 - Quantify tissue-scale stresses along AP, ML and DV axis of Zebrafish embryo?

Issue - State: open - Opened by elena-scarpa over 1 year ago - 1 comment

#299 - Export reconstructions and graphs from napari?

Issue - State: closed - Opened by elena-scarpa over 1 year ago - 2 comments

#298 - Fix bug with surface subsampling

Issue - State: open - Opened by jo-mueller over 1 year ago
Labels: bug

#297 - Add parallelization to stress toolbox

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment
Labels: enhancement

#296 - Smoothing default value to higher value?

Issue - State: open - Opened by Schroetinger over 1 year ago

#295 - Improve outlier removal

Issue - State: open - Opened by Schroetinger over 1 year ago

#294 - Parameters in droplet reconstruction in microns

Issue - State: open - Opened by Schroetinger over 1 year ago - 1 comment

#293 - used random seed in test

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment

#292 - Re use client

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment
Labels: enhancement

#291 - Improve docstrings for spherical harmonics

Issue - State: open - Opened by jo-mueller over 1 year ago

#290 - Add reference coordinate for stress projections

Issue - State: open - Opened by XShuting over 1 year ago

#289 - Measure mean squared displacement

Issue - State: open - Opened by XShuting over 1 year ago
Labels: enhancement

#288 - Documentation overhaul

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment
Labels: documentation

#287 - New version 0.2.4

Pull Request - State: closed - Opened by jo-mueller over 1 year ago
Labels: release

#286 - Add function to move points along normals

Pull Request - State: closed - Opened by jo-mueller over 1 year ago

#285 - Make solve ellipsoid equation function private

Pull Request - State: closed - Opened by jo-mueller over 1 year ago - 1 comment

GitHub / campaslab/napari-stress issues and pull requests