Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / camlab-bioml/starling issues and pull requests

#55 - add info about input file, fix spelling

Pull Request - State: closed - Opened by cklamann 3 months ago

#54 - Release 0.1.4

Pull Request - State: closed - Opened by cklamann 4 months ago

#53 - Error when using init_clustering with FlowSom method

Issue - State: closed - Opened by DC123456789 4 months ago - 1 comment
Labels: bug

#52 - update torch, lightning, scanpy

Pull Request - State: closed - Opened by cklamann 4 months ago

#50 - Runtime error on python3.9

Issue - State: open - Opened by kieranrcampbell 5 months ago

#49 - Add support for python 3.10

Pull Request - State: closed - Opened by cklamann 5 months ago

#47 - Packaging

Pull Request - State: closed - Opened by cklamann 6 months ago

#46 - cannot use cpu?

Issue - State: open - Opened by SarahAsbury 6 months ago

#45 - Issues 42, 43, 44

Pull Request - State: closed - Opened by cklamann 6 months ago

#43 - k still required even when cluster initialization is "User"

Issue - State: closed - Opened by kieranrcampbell 6 months ago - 1 comment
Labels: bug

#42 - Not using cell size throws error

Issue - State: closed - Opened by kieranrcampbell 6 months ago - 2 comments

#41 - hide output from verbose cells to cleanup tutorial

Pull Request - State: closed - Opened by cklamann 7 months ago

#41 - hide output from verbose cells to cleanup tutorial

Pull Request - State: closed - Opened by cklamann 7 months ago

#40 - Wrap lightning's `train` as an ST method

Pull Request - State: closed - Opened by cklamann 8 months ago

#40 - Wrap lightning's `train` as an ST method

Pull Request - State: closed - Opened by cklamann 8 months ago

#40 - Wrap lightning's `train` as an ST method

Pull Request - State: closed - Opened by cklamann 8 months ago

#39 - Add Colab Link to README

Pull Request - State: closed - Opened by cklamann 8 months ago

#37 - Add Basic GitHub Actions and Sphinx/RTD Auto-Documentation

Pull Request - State: closed - Opened by cklamann 10 months ago

#37 - Add Basic GitHub Actions and Sphinx/RTD Auto-Documentation

Pull Request - State: closed - Opened by cklamann 10 months ago

#36 - Add basic type hints, doc strings, validation, and high-level tests

Pull Request - State: closed - Opened by cklamann 10 months ago

#35 - Use Leiden algorithm and add argument for resolution in Phenograph option in utility.init_clustering()

Issue - State: open - Opened by DC123456789 about 1 year ago - 1 comment
Labels: enhancement

#35 - Use Leiden algorithm and add argument for resolution in Phenograph option in utility.init_clustering()

Issue - State: open - Opened by DC123456789 about 1 year ago - 1 comment
Labels: enhancement

#35 - Use Leiden algorithm and add argument for resolution in Phenograph option in utility.init_clustering()

Issue - State: open - Opened by DC123456789 about 1 year ago - 1 comment
Labels: enhancement

#34 - Import errors in getting-started.ipynb

Issue - State: open - Opened by DC123456789 about 1 year ago
Labels: bug

#34 - Import errors in getting-started.ipynb

Issue - State: open - Opened by DC123456789 about 1 year ago
Labels: bug

#34 - Import errors in getting-started.ipynb

Issue - State: open - Opened by DC123456789 about 1 year ago
Labels: bug

#33 - requirements.txt file misspelled

Issue - State: open - Opened by DC123456789 about 1 year ago
Labels: bug

#33 - requirements.txt file misspelled

Issue - State: open - Opened by DC123456789 about 1 year ago
Labels: bug

#32 - Bump release-drafter/release-drafter from 5.20.0 to 5.25.0

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#32 - Bump release-drafter/release-drafter from 5.20.0 to 5.25.0

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#32 - Bump release-drafter/release-drafter from 5.20.0 to 5.25.0

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#31 - Bump colorama from 0.4.4 to 0.4.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#31 - Bump colorama from 0.4.4 to 0.4.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#31 - Bump colorama from 0.4.4 to 0.4.6

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#30 - Bump mdit-py-plugins from 0.3.0 to 0.3.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#30 - Bump mdit-py-plugins from 0.3.0 to 0.3.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#30 - Bump mdit-py-plugins from 0.3.0 to 0.3.5

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#29 - Bump tornado from 6.1 to 6.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#29 - Bump tornado from 6.1 to 6.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#29 - Bump tornado from 6.1 to 6.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#28 - Bump markupsafe from 2.1.1 to 2.1.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#28 - Bump markupsafe from 2.1.1 to 2.1.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#28 - Bump markupsafe from 2.1.1 to 2.1.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#27 - Bump mypy-extensions from 0.4.3 to 1.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#27 - Bump mypy-extensions from 0.4.3 to 1.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#27 - Bump mypy-extensions from 0.4.3 to 1.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#26 - Bump codecov/codecov-action from 3.1.0 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#26 - Bump codecov/codecov-action from 3.1.0 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#26 - Bump codecov/codecov-action from 3.1.0 to 3.1.4

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#25 - Bump pypa/gh-action-pypi-publish from 1.5.0 to 1.8.10

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#25 - Bump pypa/gh-action-pypi-publish from 1.5.0 to 1.8.10

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#25 - Bump pypa/gh-action-pypi-publish from 1.5.0 to 1.8.10

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, github_actions

#24 - Bump sphinx-click from 4.1.0 to 5.0.1 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#24 - Bump sphinx-click from 4.1.0 to 5.0.1 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#23 - Bump furo from 2022.4.7 to 2023.9.10 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#23 - Bump furo from 2022.4.7 to 2023.9.10 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#23 - Bump furo from 2022.4.7 to 2023.9.10 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#22 - Bump myst-parser from 0.17.2 to 2.0.0 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#22 - Bump myst-parser from 0.17.2 to 2.0.0 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#22 - Bump myst-parser from 0.17.2 to 2.0.0 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#21 - Bump sphinx from 4.5.0 to 7.2.6 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#21 - Bump sphinx from 4.5.0 to 7.2.6 in /docs

Pull Request - State: open - Opened by dependabot[bot] about 1 year ago
Labels: dependencies, python

#20 - Bump atomicwrites from 1.4.0 to 1.4.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#20 - Bump atomicwrites from 1.4.0 to 1.4.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#20 - Bump atomicwrites from 1.4.0 to 1.4.1

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#19 - Bump distlib from 0.3.4 to 0.3.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#19 - Bump distlib from 0.3.4 to 0.3.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#19 - Bump distlib from 0.3.4 to 0.3.7

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#18 - Bump pre-commit-hooks from 4.2.0 to 4.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#18 - Bump pre-commit-hooks from 4.2.0 to 4.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#18 - Bump pre-commit-hooks from 4.2.0 to 4.4.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#17 - Bump virtualenv from 20.14.1 to 20.16.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#17 - Bump virtualenv from 20.14.1 to 20.16.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#17 - Bump virtualenv from 20.14.1 to 20.16.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#16 - Bump stevedore from 3.5.0 to 3.5.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#16 - Bump stevedore from 3.5.0 to 3.5.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#16 - Bump stevedore from 3.5.0 to 3.5.2

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#15 - Bump poetry from 1.1.13 to 1.6.1 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#15 - Bump poetry from 1.1.13 to 1.6.1 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#15 - Bump poetry from 1.1.13 to 1.6.1 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#14 - Bump fcsparser from 0.2.4 to 0.2.7 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#14 - Bump fcsparser from 0.2.4 to 0.2.7 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#13 - Bump nox-poetry from 1.0.0 to 1.0.3 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#13 - Bump nox-poetry from 1.0.0 to 1.0.3 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#12 - Bump jupyter-server from 1.18.1 to 2.7.3 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#11 - Bump crazy-max/ghaction-github-labeler from 4.0.0 to 5.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#11 - Bump crazy-max/ghaction-github-labeler from 4.0.0 to 5.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#10 - Bump virtualenv from 20.14.1 to 20.24.5 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#10 - Bump virtualenv from 20.14.1 to 20.24.5 in /.github/workflows

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#9 - Bump salsify/action-detect-and-tag-new-version from 2.0.1 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#9 - Bump salsify/action-detect-and-tag-new-version from 2.0.1 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#9 - Bump salsify/action-detect-and-tag-new-version from 2.0.1 to 2.0.3

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, github_actions

#8 - Bump attrs from 21.4.0 to 23.1.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#8 - Bump attrs from 21.4.0 to 23.1.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python

#8 - Bump attrs from 21.4.0 to 23.1.0 in /docs

Pull Request - State: closed - Opened by dependabot[bot] about 1 year ago - 1 comment
Labels: dependencies, python