Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / camlab-bioml/astir issues and pull requests

#36 - Added epsilon to scdataset.py to avoid NaN issues

Pull Request - State: closed - Opened by MeyerBender over 1 year ago - 1 comment

#35 - list index out of range error in SCDataset.get_mu_init()

Issue - State: open - Opened by ywu202300 over 1 year ago - 1 comment

#34 - Does Astir work linearly through the phenotype YAML file?

Issue - State: closed - Opened by Calebium almost 2 years ago - 1 comment

#33 - change sklearn to scikit-learn in requirements.txt and setup.py

Pull Request - State: closed - Opened by afrendeiro almost 2 years ago

#32 - Update requirements file for scikit-learn

Issue - State: closed - Opened by afrendeiro almost 2 years ago - 1 comment

#31 - Bump ipython from 7.17.0 to 8.10.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#30 - Bump certifi from 2020.6.20 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#29 - Bump pillow from 7.2.0 to 9.3.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#28 - Bump py from 1.9.0 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#27 - Bump joblib from 0.16.0 to 1.2.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#26 - Bump urllib3 from 1.25.10 to 1.26.5

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#25 - Fix on line 297 of celltype.py

Pull Request - State: closed - Opened by jgu13 over 2 years ago

#24 - Bump nbconvert from 5.6.1 to 6.3.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#23 - ValueError: too many values to unpack (expected 3) from ast.predict_celltypes()

Issue - State: open - Opened by jgu13 over 2 years ago - 4 comments

#22 - Bump numpy from 1.19.1 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#21 - Is it possible to use a pre-trained Astir model to infer cell types on new data?

Issue - State: closed - Opened by Calebium over 2 years ago - 1 comment

#20 - Bump pillow from 7.2.0 to 9.0.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#19 - Debug auto-assigned parameters "ValueError: The parameter loc has invalid values"

Issue - State: closed - Opened by raymond301 almost 3 years ago - 3 comments

#18 - Astir give me error message when the single-cell data is zscore normalized.

Issue - State: closed - Opened by huanlity almost 3 years ago - 1 comment

#17 - Negative expression

Issue - State: closed - Opened by vytnav about 3 years ago - 1 comment

#16 - Bump ipython from 7.17.0 to 7.31.1

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#15 - How to specify OR conditions in YAML file

Issue - State: closed - Opened by Calebium about 3 years ago - 2 comments

#14 - Bump pillow from 7.2.0 to 9.0.0

Pull Request - State: closed - Opened by dependabot[bot] about 3 years ago - 1 comment
Labels: dependencies

#13 - Installation failed on python 3.8

Issue - State: closed - Opened by joaoufrj about 3 years ago - 3 comments

#12 - forgot to apply torch.exp to mu?

Issue - State: closed - Opened by xuefei-wang over 3 years ago - 4 comments

#11 - Passed detected device during instantiation of CellTypeModel

Pull Request - State: closed - Opened by Calebium over 3 years ago

#10 - Error training model when using GPU

Issue - State: closed - Opened by Calebium over 3 years ago - 4 comments

#9 - What is alpha?

Issue - State: closed - Opened by xuefei-wang over 3 years ago - 3 comments

#8 - Bump babel from 2.8.0 to 2.9.1

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#7 - Bump pillow from 7.2.0 to 8.3.2

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#6 - Question about loss values

Issue - State: closed - Opened by nathalia-kim over 3 years ago - 2 comments

#5 - Throw error if any cell types have identical markers

Issue - State: open - Opened by kieranrcampbell almost 4 years ago
Labels: enhancement

#4 - Installation failed on python 3.6

Issue - State: closed - Opened by ngreenwald almost 4 years ago - 5 comments

#3 - yaml marker matrix format

Issue - State: open - Opened by mapourmaleki over 4 years ago - 1 comment

#2 - Check dtype of input

Issue - State: open - Opened by kieranrcampbell over 4 years ago

#1 - Only keep one copy of dataset in memory

Issue - State: closed - Opened by kieranrcampbell almost 5 years ago