Ecosyste.ms: Issues

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GitHub / calico/spatial_lda issues and pull requests

#28 - neural spatial LDA

Issue - State: open - Opened by susuhu over 1 year ago

#27 - Bump scipy from 1.3.1 to 1.10.0

Pull Request - State: open - Opened by dependabot[bot] over 1 year ago
Labels: dependencies

#26 - `np.float` incompatible with current version of `numpy`

Issue - State: open - Opened by alex-l-kong almost 2 years ago

#25 - Error encountered when training the model

Issue - State: open - Opened by huayingq1996 about 2 years ago

#24 - Bump numpy from 1.16.4 to 1.22.0

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#23 - Zh add iter args

Pull Request - State: closed - Opened by z-chen about 3 years ago

#22 - Speed adjustments

Pull Request - State: closed - Opened by bcollica over 3 years ago - 1 comment

#21 - Two minor changes

Pull Request - State: closed - Opened by bcollica over 3 years ago - 1 comment

#20 - logsumexp import error

Issue - State: closed - Opened by bcollica over 3 years ago - 1 comment

#19 - hard-coded number of parallel processes in infer function

Issue - State: closed - Opened by bcollica over 3 years ago - 1 comment

#18 - Fix regression bug in inference - don't update LDA components when in…

Pull Request - State: closed - Opened by z-chen over 3 years ago

#17 - Repeat call in line_search()

Issue - State: closed - Opened by bcollica over 3 years ago - 1 comment

#16 - Option to decrease the max_iter argument in admm().

Issue - State: closed - Opened by bcollica over 3 years ago - 1 comment

#15 - Recommendations for Updates

Issue - State: open - Opened by alead over 3 years ago

#14 - add max_ls_iter and max_dirichlet_iter as options in model.train

Issue - State: closed - Opened by MagdalenaMat about 4 years ago - 1 comment

#13 - Include anchor cells in featurization

Pull Request - State: closed - Opened by MagdalenaMat over 4 years ago - 4 comments

#12 - how to run the spatial-LDA on all cells

Issue - State: closed - Opened by MagdalenaMat over 4 years ago - 1 comment

#11 - Zh update examples

Pull Request - State: closed - Opened by z-chen over 4 years ago

#10 - Add x_col, y_col and z_col args to .

Pull Request - State: closed - Opened by z-chen over 4 years ago

#9 - Fix logging calls which passed in multiple arguments.

Pull Request - State: closed - Opened by vjojic over 4 years ago - 1 comment

#7 - Serial featurization bug

Pull Request - State: closed - Opened by vjojic over 4 years ago

#6 - Serial featurization bug

Pull Request - State: closed - Opened by vjojic over 4 years ago

#5 - Adjust notebook paths to use spatial_lda.

Pull Request - State: closed - Opened by vjojic over 4 years ago

#4 - CODEX notebook fixes.

Pull Request - State: closed - Opened by vjojic over 4 years ago

#3 - Links to examples in README need permission to open

Issue - State: closed - Opened by jennyjin19 over 4 years ago - 1 comment

#2 - Update github url in setup.py to point to this repo

Issue - State: closed - Opened by jennyjin19 over 4 years ago

#1 - Add comment in README on primal_dual versus admm.

Issue - State: closed - Opened by jennyjin19 over 4 years ago