Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / calico/solo issues and pull requests
#89 - Update packages
Pull Request -
State: closed - Opened by davek44 about 1 month ago
#88 - ImportError: cannot import name 'LightningLoggerBase' from 'pytorch_lightning.loggers'
Issue -
State: open - Opened by zznx 6 months ago
- 1 comment
#87 - Relax dependencies
Pull Request -
State: closed - Opened by JoshLoecker 6 months ago
#86 - Dependencies are too strict
Issue -
State: closed - Opened by JoshLoecker 7 months ago
- 1 comment
#85 - Bump tqdm from 4.66.2 to 4.66.3
Pull Request -
State: open - Opened by dependabot[bot] 9 months ago
Labels: dependencies
#84 - addressed conda lightning conflict
Pull Request -
State: closed - Opened by anyakors 10 months ago
#83 - Dependency conflict: lightning 2.1.4 and scvi-tools 1.1.2
Issue -
State: closed - Opened by jpintar 11 months ago
- 1 comment
#82 - set up consistent python3.12 env
Pull Request -
State: closed - Opened by anyakors 11 months ago
- 2 comments
#81 - AttributeError: 'numpy.ndarray' object has no attribute 'loc' when running solo on the test dataset
Issue -
State: open - Opened by dstyaaaaaa about 1 year ago
- 1 comment
#80 - hashsolo requires dense array
Issue -
State: open - Opened by zktuong about 1 year ago
#79 - Issues with hashsolo
Issue -
State: closed - Opened by st4302 almost 2 years ago
#78 - Error using h5ad file
Issue -
State: closed - Opened by jddavies95 about 2 years ago
- 2 comments
#77 - Hashsolo failing when only two HTOs are present?
Issue -
State: closed - Opened by apredeus over 2 years ago
- 5 comments
#76 - Solo in line?
Issue -
State: closed - Opened by cnk113 over 2 years ago
- 3 comments
#75 - Problem with solo - PyTorch Lightning
Issue -
State: closed - Opened by mari-ga over 2 years ago
- 4 comments
#74 - Problem with hashsolo
Issue -
State: open - Opened by Kani0n over 2 years ago
- 10 comments
#73 - Newbie questions: warning message, model parameters, and outputs
Issue -
State: closed - Opened by lauren-fish almost 3 years ago
- 5 comments
#72 - Add learning-rate parameter
Pull Request -
State: closed - Opened by Elhl93 almost 3 years ago
- 3 comments
#71 - Solo encountering Nan values with 10x data
Issue -
State: closed - Opened by symbiologist almost 3 years ago
- 7 comments
#70 - Allow specification of validation loss check interval
Pull Request -
State: closed - Opened by georgiaschmitt over 3 years ago
- 1 comment
#69 - python 3.6 incompatibility
Issue -
State: closed - Opened by drneavin over 3 years ago
- 5 comments
#68 - Allow user to change interval at which validation loss is checked
Issue -
State: closed - Opened by njbernstein over 3 years ago
#67 - Solo on 10x genomics scRNA data
Issue -
State: closed - Opened by rpauly over 3 years ago
- 3 comments
#66 - Error on new solo version
Issue -
State: closed - Opened by cnk113 over 3 years ago
- 8 comments
#65 - Finding solo installed version
Issue -
State: closed - Opened by mmfalco over 3 years ago
- 2 comments
#64 - Running error: "Resource temporarily unavailable"
Issue -
State: closed - Opened by mmfalco over 3 years ago
- 2 comments
#63 - h5ad for HashSolo & solo .pdf plots output
Issue -
State: closed - Opened by DanSchnell over 3 years ago
- 2 comments
#62 - Difference between is_doublet and preds
Issue -
State: closed - Opened by ymahmoud almost 4 years ago
- 2 comments
#61 - To scvi tools
Pull Request -
State: closed - Opened by njbernstein almost 4 years ago
- 9 comments
#60 - moving to scvi-tools
Issue -
State: closed - Opened by njbernstein almost 4 years ago
#59 - 2c.h5ad doesn't contain gene names
Issue -
State: closed - Opened by brianpenghe almost 4 years ago
- 1 comment
#58 - Performance testing
Pull Request -
State: closed - Opened by njbernstein almost 4 years ago
- 1 comment
#57 - Performance testing
Pull Request -
State: closed - Opened by njbernstein almost 4 years ago
- 1 comment
#56 - Problem with loom file
Issue -
State: closed - Opened by marzamKI about 4 years ago
- 11 comments
#55 - reproducible_seed
Pull Request -
State: closed - Opened by njbernstein about 4 years ago
#54 - Limited reproducibility
Pull Request -
State: closed - Opened by njbernstein about 4 years ago
- 2 comments
#53 - Running solo on a sample as a batch job
Issue -
State: closed - Opened by drlaurenwasson about 4 years ago
- 4 comments
#52 - limited reproducibility
Issue -
State: closed - Opened by grst about 4 years ago
- 4 comments
#51 - Dataset10x Failing to Load
Issue -
State: closed - Opened by drneavin about 4 years ago
- 3 comments
#50 - scvi is deprecated
Issue -
State: closed - Opened by adamgayoso over 4 years ago
- 8 comments
#49 - Underestimation of doublets with data set that contains a lot of proliferative cells
Issue -
State: closed - Opened by lenaschneehas over 4 years ago
- 3 comments
#48 - ValueError: The parameter mu has invalid values
Issue -
State: closed - Opened by drneavin over 4 years ago
- 13 comments
#47 - Text file output
Pull Request -
State: closed - Opened by njbernstein over 4 years ago
#46 - Can not read from remote repository
Issue -
State: closed - Opened by thugib over 4 years ago
- 3 comments
#45 - Output Recommendation
Issue -
State: closed - Opened by drneavin over 4 years ago
- 4 comments
#44 - Preprocessing Error - IndexError: tuple index out of range
Issue -
State: closed - Opened by JonasMir over 4 years ago
- 6 comments
#43 - scipy error
Issue -
State: closed - Opened by dylanmr over 4 years ago
- 2 comments
#42 - MemoryError
Issue -
State: closed - Opened by reykajayasinghe over 4 years ago
- 2 comments
#41 - Create notebook showing how to use and the benefits of Solo
Issue -
State: open - Opened by njbernstein over 4 years ago
- 1 comment
#40 - h5ad dataset
Issue -
State: closed - Opened by xinyiwangjuno over 4 years ago
- 1 comment
#39 - Any pre-trained model
Issue -
State: closed - Opened by JuanruMaryGuo over 4 years ago
- 3 comments
#38 - 10x to dense
Pull Request -
State: closed - Opened by njbernstein over 4 years ago
#37 - add batch_size
Pull Request -
State: closed - Opened by davek44 over 4 years ago
- 2 comments
#36 - Error during run
Issue -
State: closed - Opened by drneavin over 4 years ago
- 4 comments
#35 - checking for sparse matrix in hashsolo
Pull Request -
State: closed - Opened by njbernstein over 4 years ago
#34 - json variables
Issue -
State: closed - Opened by drneavin over 4 years ago
- 2 comments
#33 - Error in inline usage
Issue -
State: closed - Opened by jenzopr over 4 years ago
- 7 comments
#32 - sklearn.metrics error
Issue -
State: closed - Opened by guensen0 over 4 years ago
- 2 comments
#31 - Add 10x
Pull Request -
State: closed - Opened by njbernstein over 4 years ago
#30 - Implement a proper logger
Issue -
State: open - Opened by njbernstein over 4 years ago
- 1 comment
#29 - Fix requirements
Pull Request -
State: closed - Opened by njbernstein over 4 years ago
#28 - Add batching to Solo
Issue -
State: open - Opened by njbernstein over 4 years ago
- 2 comments
#27 - Add testing for performance
Issue -
State: closed - Opened by njbernstein over 4 years ago
#26 - Fix requirements
Issue -
State: closed - Opened by njbernstein over 4 years ago
#25 - Have solo consume 10x directory directly
Issue -
State: closed - Opened by njbernstein over 4 years ago
- 2 comments
#24 - Final before paper
Pull Request -
State: closed - Opened by njbernstein almost 5 years ago
#23 - Final before paper
Pull Request -
State: closed - Opened by njbernstein almost 5 years ago
#22 - a feedback on compatiblility with scvi_0.6.0
Issue -
State: closed - Opened by hy395 almost 5 years ago
- 2 comments
#21 - 3K PBMC & AnnData Output
Issue -
State: closed - Opened by hisplan almost 5 years ago
- 4 comments
#20 - Optimal Preprocessing
Issue -
State: closed - Opened by michiste about 5 years ago
- 2 comments
#19 - Running problem
Issue -
State: closed - Opened by xnnba about 5 years ago
- 3 comments
#18 - Pypi time
Pull Request -
State: closed - Opened by njbernstein about 5 years ago
#17 - Upload on conda/PyPI
Issue -
State: closed - Opened by grst about 5 years ago
- 3 comments
#16 - ValueError: Length of values does not match length of index
Issue -
State: closed - Opened by cartal about 5 years ago
- 7 comments
#15 - removed scanpy dependency
Pull Request -
State: closed - Opened by njbernstein about 5 years ago
#14 - solo installation issue
Issue -
State: closed - Opened by yding9 about 5 years ago
- 3 comments
#13 - Add scores and labels directly to `anndata` object
Issue -
State: closed - Opened by cartal about 5 years ago
- 9 comments
#12 - QUESTION: Running `solo` on multiple batches?
Issue -
State: closed - Opened by cartal about 5 years ago
- 2 comments
#11 - Bump pillow from 6.0.0 to 6.2.0
Pull Request -
State: closed - Opened by dependabot[bot] about 5 years ago
- 1 comment
Labels: dependencies
#10 - Fix install for mzhibo
Pull Request -
State: closed - Opened by njbernstein about 5 years ago
#9 - installation error
Issue -
State: closed - Opened by mzhibo about 5 years ago
- 5 comments
#8 - fixing tests
Pull Request -
State: closed - Opened by njbernstein over 5 years ago
#7 - jacobs amoolyas and eddies comments addressed
Pull Request -
State: closed - Opened by njbernstein over 5 years ago
#6 - Solo and demultiplexing code review
Pull Request -
State: closed - Opened by njbernstein over 5 years ago
- 2 comments
#5 - Demultiplex
Pull Request -
State: closed - Opened by njbernstein over 5 years ago
#4 - Demultiplex
Pull Request -
State: closed - Opened by njbernstein over 5 years ago
#3 - Demultiplex
Pull Request -
State: closed - Opened by njbernstein over 5 years ago
- 2 comments
#2 - Randomize doublet depth size scaling factors
Pull Request -
State: closed - Opened by jacobkimmel over 5 years ago
#1 - Known doublet
Pull Request -
State: closed - Opened by njbernstein over 5 years ago
- 2 comments