Ecosyste.ms: Issues

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GitHub / cBioPortal/clinical-data-dictionary issues and pull requests

#100 - typo fix

Pull Request - State: closed - Opened by averyniceday over 5 years ago

#99 - Backing up Ehcache and then pulling from backup automatically

Pull Request - State: closed - Opened by mandawilson over 5 years ago - 1 comment
Labels: enhancement, repository, test, integration-tests

#98 - Update resetCache() to sync with EHCache

Pull Request - State: closed - Opened by averyniceday over 5 years ago
Labels: enhancement

#97 - Update CDD logging

Pull Request - State: closed - Opened by ao508 over 5 years ago
Labels: enhancement, repository, service

#96 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by yichaoS over 5 years ago

#95 - Removed two attributes added through testing

Pull Request - State: closed - Opened by yichaoS over 5 years ago

#94 - My ehcache test

Pull Request - State: closed - Opened by averyniceday over 5 years ago

#93 - Exclude spring-boot-starter-logging

Pull Request - State: closed - Opened by mandawilson over 5 years ago

#92 - Updated example properties file

Pull Request - State: closed - Opened by ao508 over 5 years ago

#91 - Fixed autowiring of application.properties into ehcache.xml

Pull Request - State: closed - Opened by ao508 over 5 years ago

#90 - EHCache Configuration Fix

Pull Request - State: closed - Opened by ao508 over 5 years ago

#89 - EHCache TODO

Issue - State: open - Opened by ao508 over 5 years ago
Labels: help wanted, test, integration-tests

#88 - Init commit ehcache for CDD

Pull Request - State: closed - Opened by ao508 over 5 years ago

#87 - Init commit of basic RDF file loader

Pull Request - State: closed - Opened by ao508 almost 6 years ago - 1 comment
Labels: DO_NOT_MERGE

#86 - fix unit tests - metadata headers now being added by filename

Pull Request - State: closed - Opened by averyniceday almost 6 years ago
Labels: bug

#85 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri almost 6 years ago

#84 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra almost 6 years ago - 1 comment
Labels: data

#83 - Add new clinical attribute

Pull Request - State: closed - Opened by rmadupuri almost 6 years ago

#82 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra almost 6 years ago

#81 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra almost 6 years ago

#80 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra almost 6 years ago

#79 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra almost 6 years ago

#78 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra almost 6 years ago

#77 - new attribute for pdx

Pull Request - State: closed - Opened by averyniceday almost 6 years ago

#76 - new URI/term mapping

Pull Request - State: closed - Opened by averyniceday about 6 years ago

#75 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra about 6 years ago

#74 - New Search Endpoint /api/search

Pull Request - State: closed - Opened by averyniceday about 6 years ago - 1 comment

#73 - new MSK_SLIDE_ID attribute

Pull Request - State: closed - Opened by averyniceday about 6 years ago

#72 - Add new attributes

Pull Request - State: closed - Opened by rmadupuri about 6 years ago

#71 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by yichaoS about 6 years ago

#70 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by yichaoS about 6 years ago

#69 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra about 6 years ago

#68 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by yichaoS about 6 years ago

#67 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri about 6 years ago

#66 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra about 6 years ago

#65 - Adding new attributes

Pull Request - State: closed - Opened by rmadupuri about 6 years ago

#64 - FACETS attributes

Pull Request - State: closed - Opened by averyniceday over 6 years ago

#63 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra over 6 years ago - 1 comment

#62 - Updated URI mapping file with new attributes

Pull Request - State: closed - Opened by sheridancbio over 6 years ago
Labels: docs

#61 - new attributes added

Pull Request - State: closed - Opened by yichaoS over 6 years ago - 1 comment

#60 - Update mapping for bcc_unige_2016 new attributes

Pull Request - State: closed - Opened by yichaoS over 6 years ago - 1 comment

#59 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra over 6 years ago - 1 comment

#58 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri over 6 years ago - 1 comment

#57 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri over 6 years ago

#56 - Request: Add that `cancerStudy` parameter is optional

Issue - State: open - Opened by sandertan over 6 years ago - 1 comment
Labels: enhancement

#55 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra over 6 years ago

#54 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri over 6 years ago
Labels: data

#53 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri over 6 years ago
Labels: data

#52 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra over 6 years ago
Labels: data

#51 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra over 6 years ago - 1 comment
Labels: docs

#50 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra over 6 years ago
Labels: docs

#49 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra over 6 years ago
Labels: docs

#48 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by sheridancbio over 6 years ago - 1 comment
Labels: docs

#47 - Validate topbraid uris

Pull Request - State: closed - Opened by sheridancbio over 6 years ago
Labels: docs, integration-tests

#46 - allow URIs in curated file that are not in Topbraid

Pull Request - State: closed - Opened by mandawilson over 6 years ago
Labels: docs, integration-tests

#45 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri over 6 years ago
Labels: docs

#44 - Temp PR for integration testing with Jenkins

Pull Request - State: closed - Opened by ao508 over 6 years ago
Labels: DO_NOT_MERGE, integration-tests

#43 - testfile

Pull Request - State: closed - Opened by averyniceday over 6 years ago

#42 - testfile

Pull Request - State: closed - Opened by averyniceday over 6 years ago

#41 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri over 6 years ago

#40 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri over 6 years ago

#39 - validate_topbraid_uris Python script connects to Topbraid directly gi…

Pull Request - State: closed - Opened by mandawilson over 6 years ago
Labels: enhancement, integration-tests

#38 - Updating and correcting the clincal attribute Topbraid URI mapping

Pull Request - State: closed - Opened by mandawilson over 6 years ago - 2 comments
Labels: data

#37 - Validates Topbraid and curated URIs

Pull Request - State: closed - Opened by mandawilson over 6 years ago - 1 comment
Labels: enhancement, data

#36 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri over 6 years ago
Labels: DO_NOT_MERGE, docs

#35 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by rmadupuri over 6 years ago
Labels: DO_NOT_MERGE, docs

#34 - new resource files for integration tests

Pull Request - State: closed - Opened by averyniceday over 6 years ago
Labels: integration-tests

#33 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by averyniceday over 6 years ago
Labels: DO_NOT_MERGE, docs

#32 - Added four new studies that have overrides defined

Pull Request - State: closed - Opened by mandawilson over 6 years ago
Labels: enhancement

#31 - add testing config to avoid building failure

Pull Request - State: closed - Opened by sheridancbio over 6 years ago
Labels: enhancement

#30 - added new uri mappings

Pull Request - State: closed - Opened by averyniceday over 6 years ago
Labels: docs

#29 - CDD Cache system set to never null-out

Pull Request - State: closed - Opened by averyniceday almost 7 years ago
Labels: enhancement

#28 - Update resource_uri_to_clinical_attribute_mapping.txt

Pull Request - State: closed - Opened by ritikakundra almost 7 years ago

#27 - add-resource-to-uri-mapping-file

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago
Labels: enhancement, docs

#26 - When attributes cannot be found send user list of all problem attributes

Pull Request - State: closed - Opened by mandawilson almost 7 years ago

#25 - standardize return from cache refresh

Pull Request - State: closed - Opened by averyniceday almost 7 years ago - 2 comments
Labels: controller

#24 - `refreshCache` endpoint consistency

Issue - State: closed - Opened by ao508 almost 7 years ago - 1 comment
Labels: enhancement, controller

#23 - change to expecting ColumnHeader to be in prefLabel

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago
Labels: bug, repository, controller

#22 - add ApiIgnore annotation to hide endpoint on swagger page

Pull Request - State: closed - Opened by averyniceday almost 7 years ago
Labels: enhancement, controller

#21 - refresh cache returns strings so success is displayed

Pull Request - State: closed - Opened by averyniceday almost 7 years ago
Labels: enhancement, controller

#20 - Fix bug in single attribute api endpoint

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago - 1 comment
Labels: bug, service

#19 - Queries TobBraid for clinical attributes

Pull Request - State: closed - Opened by mandawilson almost 7 years ago

#18 - high latency / timeout for api request during cache refresh

Issue - State: open - Opened by sheridancbio almost 7 years ago
Labels: bug

#17 - Added swagger API documentation

Pull Request - State: closed - Opened by mandawilson almost 7 years ago
Labels: enhancement, controller

#16 - reordered logging messages so correct message will be displayed when …

Pull Request - State: closed - Opened by averyniceday almost 7 years ago
Labels: enhancement, repository

#15 - Endpoint to force a refresh of the cache

Pull Request - State: closed - Opened by averyniceday almost 7 years ago
Labels: enhancement, controller

#14 - Add example logback.xml and filter example files from war

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago
Labels: docs

#13 - Sclc overrides

Pull Request - State: closed - Opened by averyniceday almost 7 years ago
Labels: enhancement, service

#12 - rename overridePolicy and all variations to cancerStudy

Pull Request - State: closed - Opened by averyniceday almost 7 years ago
Labels: enhancement, controller

#11 - Enables cross origin requests from anywhere

Pull Request - State: closed - Opened by mandawilson almost 7 years ago - 1 comment

#10 - exclude clashing guava dependency

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago
Labels: bug, repository

#9 - Add override functionality (#7)

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago
Labels: enhancement, repository, service, controller

#8 - Revert "Add override functionality"

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago

#7 - Add override functionality

Pull Request - State: closed - Opened by averyniceday almost 7 years ago
Labels: enhancement, repository, service, controller

#6 - check : does google p12 credential file expire?

Issue - State: open - Opened by sheridancbio almost 7 years ago
Labels: question, repository

#5 - swagger-ui not working

Issue - State: closed - Opened by sheridancbio almost 7 years ago - 1 comment
Labels: bug, controller

#4 - Renamed application and packages

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago
Labels: repository, service, controller

#3 - Fix so that war file works

Pull Request - State: closed - Opened by mandawilson almost 7 years ago
Labels: bug

#2 - Rename packages and classes

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago

#1 - mock ClinicalAttributeCache

Pull Request - State: closed - Opened by sheridancbio almost 7 years ago