Ecosyste.ms: Issues

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GitHub / bzhanglab/WebGestaltR issues and pull requests

#55 - Could not find function "gseaPermutation"

Issue - State: open - Opened by ecirri about 2 months ago - 1 comment
Labels: bug

#54 - fix(ora): add support for using pre-defined reference lists for multilist methods

Pull Request - State: closed - Opened by iblacksand 2 months ago - 1 comment
Labels: bug

#53 - Multi-list ORA can not use pre-defined reference list

Issue - State: closed - Opened by iblacksand 2 months ago
Labels: bug

#52 - fix(ora): fix error when multiple databases are given to ORA

Pull Request - State: closed - Opened by iblacksand 3 months ago
Labels: bug

#51 - Update extendr to `0.7.0`

Pull Request - State: closed - Opened by CGMossa 3 months ago - 1 comment

#50 - Fix #49 error of caused by Windows GCC compiler

Pull Request - State: closed - Opened by iblacksand 3 months ago - 8 comments
Labels: bug

#49 - error: linking with `x86_64-w64-mingw32.static.posix-gcc.exe` failed: exit code: 1

Issue - State: closed - Opened by i-atanassov 3 months ago - 9 comments
Labels: bug

#48 - [www.webgestalt.org] server certificate verification failed

Issue - State: closed - Opened by shengqh 4 months ago - 3 comments
Labels: bug

#47 - update analytics

Pull Request - State: closed - Opened by iblacksand 4 months ago

#46 - Support 2024 data from www.webgestalt.org

Pull Request - State: closed - Opened by iblacksand 4 months ago - 1 comment
Labels: enhancement

#45 - fix(gsea): fix margin too large error

Pull Request - State: closed - Opened by iblacksand 5 months ago - 1 comment
Labels: bug

#44 - Testing this issue

Issue - State: closed - Opened by iblacksand 5 months ago

#43 - Add CookieConsent, fix multi-coloring, and add Rust NTA Method

Pull Request - State: closed - Opened by iblacksand 5 months ago
Labels: enhancement

#42 - The html looks completely different

Issue - State: closed - Opened by njbowen 5 months ago - 8 comments
Labels: bug

#41 - Cookie consent

Pull Request - State: closed - Opened by iblacksand 7 months ago

#40 - Signed bar graph

Pull Request - State: closed - Opened by iblacksand 7 months ago

#39 - Update idMappingMetabolites.R to address warning

Pull Request - State: closed - Opened by iblacksand 7 months ago

#38 - WebGestaltR v1.0.0-rc1

Pull Request - State: closed - Opened by iblacksand 7 months ago

#37 - Fix mapping

Pull Request - State: closed - Opened by iblacksand 7 months ago

#36 - Feature request: add to Biocontainers

Issue - State: open - Opened by wsjung 8 months ago - 4 comments
Labels: enhancement

#35 - Selecting molecules for GSEA

Issue - State: open - Opened by corunesa85 8 months ago

#34 - Improve or clarify the reportNum parameter

Issue - State: open - Opened by yxngl 10 months ago - 1 comment

#33 - Online app and R package do not return the same gene ID output with same parameters

Issue - State: open - Opened by epertham 10 months ago - 3 comments
Labels: bug, question

#32 - Error "could not find function "gseaPermutation""

Issue - State: closed - Opened by helaersr 12 months ago - 3 comments
Labels: bug

#31 - This error just started showing up:

Issue - State: closed - Opened by njbowen 12 months ago - 7 comments
Labels: question

#30 - WebGestalt web server is out of work

Issue - State: closed - Opened by mglgc about 1 year ago - 2 comments

#29 - Error in idMappingGene: Organism is missing. While specifying the organism

Issue - State: closed - Opened by SamDCalis about 1 year ago - 6 comments
Labels: bug

#28 - appropriate background expression ‘universes’ for GSEA

Issue - State: closed - Opened by Pchaskar over 1 year ago - 1 comment
Labels: question

#27 - Error in !is.na(data) && !is.null(data)

Issue - State: closed - Opened by ErickMUO over 1 year ago - 4 comments

#26 - Error: Organism is missing.

Issue - State: closed - Opened by Charmander2010 over 1 year ago - 2 comments

#24 - One or two sided P value for ORA?

Issue - State: closed - Opened by Nana-Liu-genetics over 1 year ago - 1 comment

#23 - Updated readGMT fn to avoid warning

Pull Request - State: closed - Opened by nfancy over 1 year ago

#22 - latest cran version is failing at devtools::build() step

Issue - State: closed - Opened by nfancy over 1 year ago - 12 comments

#21 - idMappingGene error

Issue - State: closed - Opened by shengqh over 1 year ago - 3 comments
Labels: bug

#20 - replaces http://www.webgestalt.org with https://www.webgestalt.org

Pull Request - State: closed - Opened by iblacksand over 1 year ago - 1 comment
Labels: bug

#19 - IdMapping() default host

Issue - State: closed - Opened by westbrooktm over 1 year ago - 1 comment
Labels: bug

#18 - Error using WebGestaltR() in Loading ID list step

Issue - State: closed - Opened by isha-ashi almost 2 years ago - 1 comment

#17 - Error with WebgestaltR

Issue - State: closed - Opened by bryanrhelm about 2 years ago - 1 comment

#16 - WebGestaltR error associated with user provided .gmt file

Issue - State: closed - Opened by nhu119 about 2 years ago - 1 comment

#15 - Run offline

Issue - State: closed - Opened by vincent-van-hoef over 2 years ago - 1 comment

#14 - `ERROR: No IDs are mapped` when Ensembl gene ids are provided as inputs

Issue - State: closed - Opened by integratebio over 2 years ago - 1 comment

#13 - GSEA error, n_all_rand_min missing

Issue - State: open - Opened by cmatKhan over 2 years ago

#12 - 404 Error while calling the WebGestaltR function

Issue - State: closed - Opened by ashishjain1988 almost 3 years ago - 1 comment

#11 - How can kinase targets be predicted by WebGestaltR function

Issue - State: open - Opened by QifengOu about 3 years ago - 1 comment

#10 - weightedSetCover input from WebGestaltR function

Issue - State: closed - Opened by kmshort over 3 years ago - 2 comments

#7 - GSEA takes too long to execute

Issue - State: open - Opened by nfancy about 4 years ago - 2 comments

#6 - R session arborts when running WebGestaltR

Issue - State: open - Opened by janstrauss1 over 4 years ago - 2 comments

#5 - Would be useful to return a list of GOs

Issue - State: open - Opened by eggrandio over 4 years ago

#4 - Error in WebGestaltRBatch for GSEA

Issue - State: closed - Opened by danielnewhouse over 4 years ago - 1 comment

#3 - Warning when loading reference gene list

Issue - State: closed - Opened by Pweidemueller about 5 years ago - 1 comment

#2 - cache file at local

Pull Request - State: closed - Opened by shengqh over 5 years ago - 2 comments

#1 - TODO

Issue - State: closed - Opened by bingzhang16 about 7 years ago
Labels: invalid