Ecosyste.ms: Issues

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GitHub / bvalot/pyMLST issues and pull requests

#35 - fail building database for S. pneumoniae

Issue - State: closed - Opened by juanjo255 6 months ago - 2 comments

#34 - claMLST import relies on deprecated pubMLST API DB list

Issue - State: open - Opened by meg256 8 months ago - 8 comments

#33 - Clonal Complex and lineage in output

Issue - State: open - Opened by valerievandervorst 10 months ago - 1 comment

#32 - Cleanup code

Pull Request - State: closed - Opened by bvalot 10 months ago

#31 - Database/Schema version

Issue - State: open - Opened by marchoeppner 10 months ago - 3 comments

#30 - claMLST - cannot install Klebsiella pneumoniae

Issue - State: closed - Opened by marchoeppner 11 months ago - 1 comment

#29 - Move to 2.1.6

Pull Request - State: closed - Opened by bvalot 11 months ago

#28 - Add pasteur repository to classical MLST search

Pull Request - State: closed - Opened by bvalot 11 months ago

#27 - Import function - Biopython module deprecated

Issue - State: open - Opened by marchoeppner 11 months ago - 1 comment

#26 - Correct Docs requirement and add pymlst paper

Pull Request - State: closed - Opened by bvalot 11 months ago

#25 - Switch to direct subprocess for mafft alignment as for blat or kma

Pull Request - State: closed - Opened by bvalot about 1 year ago

#24 - Correct error on KMA search for claMLST from pubMLST

Pull Request - State: closed - Opened by bvalot about 1 year ago

#23 - biopython deprecation warning

Issue - State: closed - Opened by ammaraziz about 1 year ago - 1 comment

#22 - Correcting typo in export_res.rst

Pull Request - State: closed - Opened by bajicv about 1 year ago - 1 comment

#21 - Add a batch mode to the dabase import ?

Issue - State: open - Opened by pimarin about 1 year ago - 6 comments

#20 - Add badges to README.md

Pull Request - State: closed - Opened by bvalot over 1 year ago

#19 - Spelling mistake in recombination sub-command

Issue - State: closed - Opened by charlie-durant over 1 year ago - 3 comments

#18 - Error: BLAT binary was not found

Issue - State: closed - Opened by charlie-durant over 1 year ago - 2 comments

#17 - problem downloading pyMLST

Issue - State: closed - Opened by aymericola almost 2 years ago - 1 comment

#16 - Mycobacteria cgMLST Typing

Issue - State: closed - Opened by mweberr almost 2 years ago - 2 comments

#15 - HI, How to work with proteus spp.

Issue - State: open - Opened by suua123 almost 2 years ago - 1 comment

#14 - got an unexpected keyword argument 'name'

Issue - State: closed - Opened by famiji almost 2 years ago - 21 comments

#13 - fail to import batabase

Issue - State: closed - Opened by famiji almost 2 years ago

#12 - Upgrade support python version

Issue - State: closed - Opened by dgslos almost 2 years ago - 10 comments

#11 - BLAT error

Issue - State: open - Opened by kediza about 2 years ago - 10 comments

#10 - Error: BLAT binary was not found/KMA binary was not found

Issue - State: closed - Opened by sunx0766 over 2 years ago - 3 comments

#9 - Create a database input example

Issue - State: closed - Opened by sunx0766 over 2 years ago - 2 comments

#8 - SQL error on import

Issue - State: open - Opened by oliverdrechsel over 2 years ago - 3 comments

#7 - Can't find allele

Issue - State: open - Opened by MMAThijssen over 2 years ago - 5 comments

#6 - query with in parallel?

Issue - State: closed - Opened by lskatz over 2 years ago - 2 comments

#5 - Possible name collission

Issue - State: open - Opened by lskatz over 2 years ago - 2 comments

#4 - MLST import or create documentation

Issue - State: closed - Opened by lskatz over 2 years ago - 14 comments

#3 - multi-fasta file for scheme creation

Issue - State: closed - Opened by 215220606 almost 3 years ago - 3 comments

#2 - Python3 fix

Pull Request - State: closed - Opened by sladinji over 4 years ago - 1 comment

#1 - Can't find the last locus in sheme

Issue - State: closed - Opened by Dong-Ning over 5 years ago - 4 comments