buettnerlab/pytometry issues and pull requests

#62 - add autologicle normalization function

Pull Request - State: closed - Opened by mbuttner 6 months ago - 3 comments

#61 - Add autologicle normalization function

Pull Request - State: open - Opened by KarolaM 6 months ago

#60 - AttributeError: module 'pytometry' has no attribute 'io'

Issue - State: closed - Opened by hrj21 7 months ago - 5 comments

#59 - FlowSOM

Pull Request - State: closed - Opened by burtonrj about 1 year ago - 3 comments

#58 - Small error in scatter_density

Issue - State: open - Opened by burtonrj about 1 year ago - 1 comment

#57 - 💄 update example data

Pull Request - State: closed - Opened by mbuttner about 1 year ago - 2 comments

#56 - Improve quick start

Issue - State: closed - Opened by falexwolf about 1 year ago - 3 comments

#55 - :sparkles: several cofactors for arcsinh

Pull Request - State: closed - Opened by mbuttner about 1 year ago - 2 comments

#54 - Applying normalisation co-factors by channel

Issue - State: closed - Opened by alexclarke7 about 1 year ago - 5 comments

#53 - Better example data

Issue - State: closed - Opened by mbuttner about 1 year ago - 1 comment

#52 - Implement CATALYST functionality

Issue - State: open - Opened by mbuttner about 1 year ago
Labels: enhancement

#51 - Tutorial for interoperability with R data structures

Issue - State: open - Opened by mbuttner about 1 year ago
Labels: enhancement

#50 - Write fcs function

Issue - State: open - Opened by mbuttner about 1 year ago
Labels: enhancement

#49 - Extend to phenograph

Issue - State: open - Opened by mbuttner about 1 year ago - 2 comments
Labels: enhancement

#48 - Basic gating functionality

Issue - State: open - Opened by mbuttner about 1 year ago - 1 comment
Labels: enhancement, help wanted

#47 - Speed up and extend normalizations

Issue - State: open - Opened by mbuttner about 1 year ago - 16 comments
Labels: enhancement, help wanted

#46 - Implement FlowSOM type of clustering

Issue - State: closed - Opened by mbuttner about 1 year ago - 2 comments
Labels: enhancement

#45 - :pencil2: Update version

Pull Request - State: closed - Opened by mbuttner about 1 year ago - 2 comments

#44 - :wrench: update maintainer mail

Pull Request - State: closed - Opened by mbuttner about 1 year ago - 2 comments

#43 - ⚡ Various improvements to scatter_density

Pull Request - State: closed - Opened by grst over 1 year ago - 1 comment

#42 - ✏️ Update API docs

Pull Request - State: closed - Opened by grst over 1 year ago - 2 comments

#41 - Copy original data in `compensate`

Pull Request - State: closed - Opened by grst over 1 year ago - 1 comment

#40 - :construction_worker: Update nbproject test

Pull Request - State: closed - Opened by mbuttner over 1 year ago - 1 comment

#39 - 🐛 Small fix for bug in compensation function.

Pull Request - State: closed - Opened by ricomnl over 1 year ago - 5 comments

#38 - Adjust limits of X or Y axis using pm.pl.scatter_density function

Issue - State: closed - Opened by mlukosev over 1 year ago - 1 comment

#37 - Problem in installing pytomerty with latest version of Python

Issue - State: closed - Opened by Minoo-ASTY over 1 year ago - 4 comments

#36 - Pytometry and dot plot function of scanpy

Issue - State: closed - Opened by pmarzano97 over 1 year ago - 1 comment

#35 - :arrow_up: Update readfcs dependency

Pull Request - State: closed - Opened by mbuttner almost 2 years ago - 2 comments

#34 - :memo: add annotation nb

Pull Request - State: closed - Opened by mbuttner almost 2 years ago - 2 comments

#33 - 💄 Added parameter type hints

Pull Request - State: closed - Opened by Ma-Fi-94 about 2 years ago - 5 comments

#32 - :bug: add map channels

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 1 comment

#31 - :memo: clean up docs

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 2 comments

#30 - 📝 update readme links

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 2 comments

#29 - ✏️ Update README.md

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 1 comment

#28 - pm.io.read_fcs error: KeyError: 'marker'

Issue - State: closed - Opened by alefrol638 about 2 years ago - 6 comments

#27 - Humap

Pull Request - State: closed - Opened by erguntiryaki about 2 years ago - 2 comments

#26 - 🚑 fix compensation formula

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 1 comment

#25 - 👷 Install `lndocs` from PyPI

Pull Request - State: closed - Opened by falexwolf about 2 years ago - 1 comment

#24 - :lipstick: update readme and examples

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 2 comments

#23 - :fire: cleanup

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 2 comments

#22 - ✨ Add `density_scatter` plotting function

Pull Request - State: closed - Opened by KarolaM about 2 years ago

#21 - ✅ add tests

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 2 comments

#20 - 👷 Style docs correctly

Pull Request - State: closed - Opened by falexwolf about 2 years ago - 1 comment

#19 - ✨ add plotting module

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 2 comments

#18 - :art: improved split_signal

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 1 comment

#17 - :sparkles: match columns in compensate

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 2 comments

#16 - 🎨 replace copy by inplace

Pull Request - State: closed - Opened by mbuttner about 2 years ago - 1 comment

#15 - 🎨 Simplify read function and datasets calls

Pull Request - State: closed - Opened by sunnyosun about 2 years ago - 2 comments

#14 - Rename `copy` to `inplace`

Issue - State: closed - Opened by falexwolf about 2 years ago - 4 comments